Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003032A_C01 KMC003032A_c01
(513 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_619708.1| non-structural protein [Impatiens necrotic spot... 32 4.3
ref|NP_506858.1| Predicted CDS, 7 transmembrane chemoreceptor fa... 31 9.6
>ref|NP_619708.1| non-structural protein [Impatiens necrotic spot virus]
gi|400620|sp|Q01811|VNSS_INSVN NONSTRUCTURAL PROTEIN
NS-S gi|281372|pir||S23158 nucleocapsid protein -
Impatiens necrotic spot virus gi|60489|emb|CAA47382.1|
non-structural protein [Impatiens necrotic spot virus]
Length = 449
Score = 32.0 bits (71), Expect = 4.3
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 7/112 (6%)
Frame = +2
Query: 65 EWLHNLFCFLGQIRKRERKRNWMSALSAFNQ*TNHLHSK*LQ*NRTRIKLNNHQNLRTN- 241
EWL+ L Q + R N ++ S T+ L S + ++LNN++ + +
Sbjct: 193 EWLYTLKPVFNQSQTNNRTVNTLAVKSLAMSATSDLMSD----THSFVRLNNNKPFKISL 248
Query: 242 --RLPHLSLLFTNFLSHFFLFITS----RYHLHLSCSMRENNQGTVIQHYGD 379
R+P ++ +N S FF Y++ + C NN TVI++ D
Sbjct: 249 WMRIP--KIMKSNTYSRFFTLSDESSPKEYYISIQCLPNHNNVETVIEYNFD 298
>ref|NP_506858.1| Predicted CDS, 7 transmembrane chemoreceptor family member family
member [Caenorhabditis elegans] gi|7495513|pir||T18992
hypothetical protein C06B8.6 - Caenorhabditis elegans
gi|2276147|emb|CAB03849.1| C. elegans SRH-219 protein
(corresponding sequence C06B8.6) [Caenorhabditis
elegans]
Length = 290
Score = 30.8 bits (68), Expect = 9.6
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +3
Query: 216 IIIKILEPTGCLTYPFFLPIFSHTFSYSSQVAT 314
II+++L P+ CL PFF FS F Y +Q T
Sbjct: 196 IILQLLIPSFCLNTPFFYIGFSGAFGYFNQKLT 228
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 394,870,985
Number of Sequences: 1393205
Number of extensions: 7629988
Number of successful extensions: 14604
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14601
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
