Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003030A_C01 KMC003030A_c01
(601 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199045.1| ubiquitin-like protein; protein id: At5g42300.1... 150 9e-36
ref|NP_190104.1| putative protein; protein id: At3g45180.1 [Arab... 143 1e-33
gb|EAA18158.1| ubiquitin-like protein [Plasmodium yoelii yoelii] 140 2e-32
ref|NP_701728.1| ubiquitin-like protein, putative [Plasmodium fa... 139 4e-32
ref|NP_077268.1| ubiquitin-like 5 [Homo sapiens] gi|13384784|ref... 125 4e-28
>ref|NP_199045.1| ubiquitin-like protein; protein id: At5g42300.1, supported by cDNA:
gi_13899064, supported by cDNA: gi_18377565 [Arabidopsis
thaliana] gi|10177015|dbj|BAB10203.1| ubiquitin-like
protein [Arabidopsis thaliana]
gi|13899065|gb|AAK48954.1|AF370527_1 ubiquitin-like
protein [Arabidopsis thaliana]
gi|18377566|gb|AAL66949.1| ubiquitin-like protein
[Arabidopsis thaliana]
Length = 73
Score = 150 bits (380), Expect = 9e-36
Identities = 71/73 (97%), Positives = 73/73 (99%)
Frame = -1
Query: 571 MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLRDY 392
MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRA+KIRIQKWYNIYKDHITL+DY
Sbjct: 1 MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60
Query: 391 EIHDGMGLELYYN 353
EIHDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73
>ref|NP_190104.1| putative protein; protein id: At3g45180.1 [Arabidopsis thaliana]
gi|11358004|pir||T47458 hypothetical protein T14D3.120 -
Arabidopsis thaliana gi|6911856|emb|CAB72156.1| putative
protein [Arabidopsis thaliana]
Length = 73
Score = 143 bits (361), Expect = 1e-33
Identities = 67/73 (91%), Positives = 71/73 (96%)
Frame = -1
Query: 571 MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLRDY 392
MIEVVLNDRLGKKVRVKCN++DTIGDLKKLVAAQTGTR +KIRIQKWYNIYKDHI L+DY
Sbjct: 1 MIEVVLNDRLGKKVRVKCNEEDTIGDLKKLVAAQTGTRPEKIRIQKWYNIYKDHIPLKDY 60
Query: 391 EIHDGMGLELYYN 353
EIHDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73
>gb|EAA18158.1| ubiquitin-like protein [Plasmodium yoelii yoelii]
Length = 73
Score = 140 bits (352), Expect = 2e-32
Identities = 65/73 (89%), Positives = 69/73 (94%)
Frame = -1
Query: 571 MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLRDY 392
MIE++LNDRLGKK+RVKCN DDTIGDLKKLVAAQTGTRADKIRIQKWY IYKDHITL+DY
Sbjct: 1 MIEIILNDRLGKKIRVKCNPDDTIGDLKKLVAAQTGTRADKIRIQKWYTIYKDHITLQDY 60
Query: 391 EIHDGMGLELYYN 353
EI DGM LELYYN
Sbjct: 61 EIKDGMSLELYYN 73
>ref|NP_701728.1| ubiquitin-like protein, putative [Plasmodium falciparum 3D7]
gi|23496900|gb|AAN36452.1|AE014850_17 ubiquitin-like
protein, putative [Plasmodium falciparum 3D7]
Length = 73
Score = 139 bits (349), Expect = 4e-32
Identities = 65/73 (89%), Positives = 69/73 (94%)
Frame = -1
Query: 571 MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLRDY 392
MIE++LNDRLGKK+RVKCN DDTIGDLKKLVAAQTGTRADKIRIQKWY IYKDHITL+DY
Sbjct: 1 MIEIILNDRLGKKIRVKCNPDDTIGDLKKLVAAQTGTRADKIRIQKWYIIYKDHITLQDY 60
Query: 391 EIHDGMGLELYYN 353
EI DGM LELYYN
Sbjct: 61 EIKDGMSLELYYN 73
>ref|NP_077268.1| ubiquitin-like 5 [Homo sapiens] gi|13384784|ref|NP_079677.1|
ubiquitin-like 5 [Mus musculus]
gi|11345430|gb|AAG34704.1|AF318186_1 beacon [Psammomys
obesus] gi|12832924|dbj|BAB22312.1| unnamed protein
product [Mus musculus] gi|12834985|dbj|BAB23111.1|
unnamed protein product [Mus musculus]
gi|12841455|dbj|BAB25215.1| unnamed protein product [Mus
musculus] gi|12844907|dbj|BAB26545.1| unnamed protein
product [Mus musculus] gi|12849788|dbj|BAB28481.1|
unnamed protein product [Mus musculus]
gi|13172662|gb|AAK14178.1|AF313915_1 ubiquitin-like 5
protein [Homo sapiens]
gi|13937891|gb|AAH07053.1|AAH07053 ubiquitin-like 5
[Homo sapiens] gi|20306397|gb|AAH28498.1| ubiquitin-like
5 [Mus musculus] gi|26341750|dbj|BAC34537.1| unnamed
protein product [Mus musculus]
Length = 73
Score = 125 bits (314), Expect = 4e-28
Identities = 58/72 (80%), Positives = 65/72 (89%)
Frame = -1
Query: 571 MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLRDY 392
MIEVV NDRLGKKVRVKCN DDTIGDLKKL+AAQTGTR +KI ++KWY I+KDH++L DY
Sbjct: 1 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 60
Query: 391 EIHDGMGLELYY 356
EIHDGM LELYY
Sbjct: 61 EIHDGMNLELYY 72
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 531,291,624
Number of Sequences: 1393205
Number of extensions: 12486682
Number of successful extensions: 46609
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 39631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43938
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
