Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003029A_C01 KMC003029A_c01
(628 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T51098 hypothetical protein p85RF [imported] - Prunus armen... 119 2e-26
ref|NP_564585.1| expressed protein; protein id: At1g51200.1, sup... 111 7e-24
gb|AAN71995.1| expressed protein [Arabidopsis thaliana] 111 7e-24
ref|NP_180326.1| putative zinc finger protein; protein id: At2g2... 100 1e-20
gb|AAO37974.1| putative zinc finger protein [Oryza sativa (japon... 100 2e-20
>pir||T51098 hypothetical protein p85RF [imported] - Prunus armeniaca
gi|5031281|gb|AAD38146.1|AF139499_1 unknown [Prunus
armeniaca]
Length = 173
Score = 119 bits (299), Expect = 2e-26
Identities = 52/75 (69%), Positives = 63/75 (83%)
Frame = -2
Query: 591 SGESLEVKAKTGPSRCGTCRKRVGLTGFSCKCGNVFCAMHRYSDKHDCPFDYRAVGQEAI 412
SG S E K + GP RCGTC KRVGLTGF+C+CG++FCA+HRYSDKHDCP+DY ++ I
Sbjct: 100 SGGSGEAKPE-GPKRCGTCNKRVGLTGFNCRCGHLFCAVHRYSDKHDCPYDYHTAARDVI 158
Query: 411 AKANPVIKADKLDKI 367
AKANPV+KADKL+KI
Sbjct: 159 AKANPVVKADKLEKI 173
>ref|NP_564585.1| expressed protein; protein id: At1g51200.1, supported by cDNA:
gi_15912334 [Arabidopsis thaliana]
gi|25405449|pir||G96549 hypothetical protein F11M15.7
[imported] - Arabidopsis thaliana
gi|4836932|gb|AAD30634.1|AC006085_7 Unknown protein
[Arabidopsis thaliana] gi|15912335|gb|AAL08301.1|
At1g51200/F11M15_6 [Arabidopsis thaliana]
Length = 173
Score = 111 bits (278), Expect = 7e-24
Identities = 48/70 (68%), Positives = 55/70 (78%)
Frame = -2
Query: 576 EVKAKTGPSRCGTCRKRVGLTGFSCKCGNVFCAMHRYSDKHDCPFDYRAVGQEAIAKANP 397
E GPSRC TC KRVGLTGF C+CG++FC HRY+D HDC F+Y A QEAIAKANP
Sbjct: 104 EAAKPKGPSRCTTCNKRVGLTGFKCRCGSLFCGTHRYADVHDCSFNYHAAAQEAIAKANP 163
Query: 396 VIKADKLDKI 367
V+KA+KLDKI
Sbjct: 164 VVKAEKLDKI 173
>gb|AAN71995.1| expressed protein [Arabidopsis thaliana]
Length = 173
Score = 111 bits (278), Expect = 7e-24
Identities = 48/70 (68%), Positives = 55/70 (78%)
Frame = -2
Query: 576 EVKAKTGPSRCGTCRKRVGLTGFSCKCGNVFCAMHRYSDKHDCPFDYRAVGQEAIAKANP 397
E GPSRC TC KRVGLTGF C+CG++FC HRY+D HDC F+Y A QEAIAKANP
Sbjct: 104 EAAKPKGPSRCTTCNKRVGLTGFKCRCGSLFCGTHRYADVHDCSFNYHAAAQEAIAKANP 163
Query: 396 VIKADKLDKI 367
V+KA+KLDKI
Sbjct: 164 VVKAEKLDKI 173
>ref|NP_180326.1| putative zinc finger protein; protein id: At2g27580.1, supported by
cDNA: 14203., supported by cDNA: gi_18253038
[Arabidopsis thaliana] gi|25407907|pir||D84674
hypothetical protein At2g27580 [imported] - Arabidopsis
thaliana gi|3860274|gb|AAC73042.1| putative zinc finger
protein [Arabidopsis thaliana]
gi|18253039|gb|AAL62446.1| putative zinc finger protein
[Arabidopsis thaliana] gi|20197663|gb|AAM15188.1|
putative zinc finger protein [Arabidopsis thaliana]
gi|21553397|gb|AAM62490.1| putative zinc finger protein
[Arabidopsis thaliana] gi|23198266|gb|AAN15660.1|
putative zinc finger protein [Arabidopsis thaliana]
Length = 163
Score = 100 bits (250), Expect = 1e-20
Identities = 39/63 (61%), Positives = 54/63 (84%)
Frame = -2
Query: 555 PSRCGTCRKRVGLTGFSCKCGNVFCAMHRYSDKHDCPFDYRAVGQEAIAKANPVIKADKL 376
P RC TCR+RVG+TGF C+CG VFC HRY+++H+C FD++ +G++ IAKANP++KADKL
Sbjct: 101 PKRCLTCRRRVGITGFRCRCGFVFCGTHRYAEQHECSFDFKRMGKDKIAKANPIVKADKL 160
Query: 375 DKI 367
+KI
Sbjct: 161 EKI 163
>gb|AAO37974.1| putative zinc finger protein [Oryza sativa (japonica
cultivar-group)]
Length = 160
Score = 100 bits (248), Expect = 2e-20
Identities = 41/66 (62%), Positives = 52/66 (78%)
Frame = -2
Query: 564 KTGPSRCGTCRKRVGLTGFSCKCGNVFCAMHRYSDKHDCPFDYRAVGQEAIAKANPVIKA 385
K +RC +CRK+VGLTGF C+CG FC+MHRY+D H C FDY+ VG+E IAK NP++KA
Sbjct: 95 KPPSNRCLSCRKKVGLTGFKCRCGGTFCSMHRYADSHKCTFDYKQVGREQIAKQNPLVKA 154
Query: 384 DKLDKI 367
DK+ KI
Sbjct: 155 DKITKI 160
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 536,145,803
Number of Sequences: 1393205
Number of extensions: 11316662
Number of successful extensions: 26392
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 25061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26383
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25586195130
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
