Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003028A_C01 KMC003028A_c01
(614 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM60961.1| seed maturation-like protein [Arabidopsis thaliana] 105 1e-35
ref|NP_197001.1| seed maturation -like protein; protein id: At5g... 105 1e-35
ref|NP_179097.1| unknown protein; protein id: At2g14910.1, suppo... 64 2e-09
gb|AAF21309.1| seed maturation protein PM23 [Glycine max] 54 1e-06
ref|NP_441769.1| unknown protein [Synechocystis sp. PCC 6803] gi... 39 0.054
>gb|AAM60961.1| seed maturation-like protein [Arabidopsis thaliana]
Length = 355
Score = 105 bits (263), Expect(2) = 1e-35
Identities = 50/86 (58%), Positives = 74/86 (85%)
Frame = -2
Query: 613 NYIQQLQSELTNVKEELNARKQEMMQLEYDRGIRNNLLEYLRSLDPEMVTELSRPSSVEV 434
+YIQ LQSEL+++KEEL+++K++ +++E ++G RN+LL+YLRSLDPEMVTELS+ SS EV
Sbjct: 216 SYIQLLQSELSSMKEELDSQKKKALRIECEKGNRNDLLDYLRSLDPEMVTELSQLSSPEV 275
Query: 433 EDIIHQLVQNILSRFFVDDASGSFME 356
E+I++QLVQN+L R F D + +FM+
Sbjct: 276 EEIVNQLVQNVLERLFEDQTTSNFMQ 301
Score = 66.2 bits (160), Expect(2) = 1e-35
Identities = 30/31 (96%), Positives = 30/31 (96%)
Frame = -1
Query: 272 LAKLLFWCMLLGHHLRGLENRLQLSCVVGLL 180
LAKLLFWCMLLGHHLRGLENRL LSCVVGLL
Sbjct: 325 LAKLLFWCMLLGHHLRGLENRLHLSCVVGLL 355
>ref|NP_197001.1| seed maturation -like protein; protein id: At5g14970.1, supported
by cDNA: 106301. [Arabidopsis thaliana]
gi|11346180|pir||T51442 seed maturation-like protein -
Arabidopsis thaliana gi|9755664|emb|CAC01816.1| seed
maturation-like protein [Arabidopsis thaliana]
gi|22655278|gb|AAM98229.1| seed maturation-like protein
[Arabidopsis thaliana]
Length = 355
Score = 105 bits (263), Expect(2) = 1e-35
Identities = 50/86 (58%), Positives = 74/86 (85%)
Frame = -2
Query: 613 NYIQQLQSELTNVKEELNARKQEMMQLEYDRGIRNNLLEYLRSLDPEMVTELSRPSSVEV 434
+YIQ LQSEL+++KEEL+++K++ +++E ++G RN+LL+YLRSLDPEMVTELS+ SS EV
Sbjct: 216 SYIQLLQSELSSMKEELDSQKKKALRIECEKGNRNDLLDYLRSLDPEMVTELSQLSSPEV 275
Query: 433 EDIIHQLVQNILSRFFVDDASGSFME 356
E+I++QLVQN+L R F D + +FM+
Sbjct: 276 EEIVNQLVQNVLERLFEDQTTSNFMQ 301
Score = 66.2 bits (160), Expect(2) = 1e-35
Identities = 30/31 (96%), Positives = 30/31 (96%)
Frame = -1
Query: 272 LAKLLFWCMLLGHHLRGLENRLQLSCVVGLL 180
LAKLLFWCMLLGHHLRGLENRL LSCVVGLL
Sbjct: 325 LAKLLFWCMLLGHHLRGLENRLHLSCVVGLL 355
>ref|NP_179097.1| unknown protein; protein id: At2g14910.1, supported by cDNA:
gi_17380883, supported by cDNA: gi_19698842, supported
by cDNA: gi_20465934 [Arabidopsis thaliana]
gi|25368604|pir||H84522 hypothetical protein At2g14910
[imported] - Arabidopsis thaliana
gi|3650033|gb|AAC61288.1| unknown protein [Arabidopsis
thaliana] gi|17380884|gb|AAL36254.1| unknown protein
[Arabidopsis thaliana] gi|19698843|gb|AAL91157.1|
unknown protein [Arabidopsis thaliana]
gi|20465935|gb|AAM20153.1| unknown protein [Arabidopsis
thaliana]
Length = 386
Score = 63.5 bits (153), Expect = 2e-09
Identities = 32/75 (42%), Positives = 53/75 (70%), Gaps = 3/75 (4%)
Frame = -2
Query: 610 YIQQLQSELTNVKEELNARKQEMMQLEYDRGI---RNNLLEYLRSLDPEMVTELSRPSSV 440
YI +LQS+L++VK+EL +++ L+ + + +N+LL+YLRSL PE V ELS P++
Sbjct: 221 YILRLQSQLSSVKKELQEMRRKNAALQMQQFVGEEKNDLLDYLRSLQPEKVAELSEPAAP 280
Query: 439 EVEDIIHQLVQNILS 395
EV++ IH +V +L+
Sbjct: 281 EVKETIHSVVHGLLA 295
Score = 47.8 bits (112), Expect = 1e-04
Identities = 21/30 (70%), Positives = 26/30 (86%)
Frame = -1
Query: 272 LAKLLFWCMLLGHHLRGLENRLQLSCVVGL 183
LA+LLFWCMLLGH+LRGLE R++L V+ L
Sbjct: 346 LARLLFWCMLLGHYLRGLEYRMELMEVLSL 375
>gb|AAF21309.1| seed maturation protein PM23 [Glycine max]
Length = 404
Score = 54.3 bits (129), Expect = 1e-06
Identities = 30/75 (40%), Positives = 50/75 (66%), Gaps = 3/75 (4%)
Frame = -2
Query: 610 YIQQLQSELTNVKEELNARKQEMMQLEYDRGI---RNNLLEYLRSLDPEMVTELSRPSSV 440
YI LQS L+++K+EL+ K++ L+ + + +N+LL+YLRSL PE V +LS +S
Sbjct: 235 YIFNLQSRLSSMKKELHEVKRKSAALQMQQFVGEEKNDLLDYLRSLQPEQVAQLSEFTSP 294
Query: 439 EVEDIIHQLVQNILS 395
E++D I +V +L+
Sbjct: 295 ELKDTILSVVHGLLA 309
>ref|NP_441769.1| unknown protein [Synechocystis sp. PCC 6803] gi|7446611|pir||S76190
hypothetical protein - Synechocystis sp. (strain PCC
6803) gi|1653536|dbj|BAA18449.1| ORF_ID:slr1638~unknown
protein [Synechocystis sp. PCC 6803]
Length = 107
Score = 38.9 bits (89), Expect = 0.054
Identities = 17/45 (37%), Positives = 30/45 (65%)
Frame = -2
Query: 511 NNLLEYLRSLDPEMVTELSRPSSVEVEDIIHQLVQNILSRFFVDD 377
N LL+YL+ PE + +++ +S E+++IIHQ VQ ++ +DD
Sbjct: 18 NTLLQYLQKQHPETLAWIAQSASPEIKEIIHQNVQGLVGMLPMDD 62
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 520,137,775
Number of Sequences: 1393205
Number of extensions: 11099325
Number of successful extensions: 29380
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 28112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29330
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
