Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003027A_C01 KMC003027A_c01
(564 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC34855.1| senescence-associated protein 5 [Hemerocallis hyb... 74 3e-15
ref|NP_194534.1| senescence-associated protein -like; protein id... 79 3e-15
gb|AAM14957.1| hypothetical protein [Arabidopsis thaliana] 78 1e-14
ref|NP_179961.2| hypothetical protein; protein id: At2g23810.1, ... 78 1e-14
gb|AAO72638.1| senescence-associated protein-like protein [Oryza... 71 8e-12
>gb|AAC34855.1| senescence-associated protein 5 [Hemerocallis hybrid cultivar]
Length = 275
Score = 74.3 bits (181), Expect(2) = 3e-15
Identities = 32/50 (64%), Positives = 41/50 (82%), Gaps = 4/50 (8%)
Frame = -3
Query: 517 QAGLLQNIKTDWKKVAVVNVIFLVFLIIVYSIGCCAFRNNRNDN----WK 380
+ G++ N+K+ WKKVAVVN+IFL+F+IIVYS+GCCAFRNN DN WK
Sbjct: 223 KGGVIANLKSKWKKVAVVNIIFLIFIIIVYSVGCCAFRNNLKDNAYSGWK 272
Score = 28.9 bits (63), Expect(2) = 3e-15
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -1
Query: 561 WDNDPMLLCFNCHS 520
W+NDP +LC++C S
Sbjct: 208 WENDPTILCYDCQS 221
>ref|NP_194534.1| senescence-associated protein -like; protein id: At4g28050.1,
supported by cDNA: 39831., supported by cDNA:
gi_17065395, supported by cDNA: gi_20148628 [Arabidopsis
thaliana] gi|7488327|pir||T02906 senescence-associated
protein homolog T13J8.160 - Arabidopsis thaliana
gi|4455364|emb|CAB36774.1| senescence-associated
protein-like [Arabidopsis thaliana]
gi|7269659|emb|CAB79607.1| senescence-associated
protein-like [Arabidopsis thaliana]
gi|17065396|gb|AAL32852.1| senescence-associated
protein-like [Arabidopsis thaliana]
gi|20148629|gb|AAM10205.1| senescence-associated
protein-like [Arabidopsis thaliana]
gi|21593528|gb|AAM65495.1| senescence-associated
protein-like [Arabidopsis thaliana]
Length = 263
Score = 78.6 bits (192), Expect(2) = 3e-15
Identities = 33/45 (73%), Positives = 39/45 (86%)
Frame = -3
Query: 517 QAGLLQNIKTDWKKVAVVNVIFLVFLIIVYSIGCCAFRNNRNDNW 383
+AGLL NIK WKKVA VN++FL+FLIIVYS+GCCAFRNNR +W
Sbjct: 219 KAGLLDNIKNSWKKVAKVNIVFLIFLIIVYSVGCCAFRNNRKRSW 263
Score = 24.6 bits (52), Expect(2) = 3e-15
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -1
Query: 561 WDNDPMLLCFNCHS 520
WDN P LC++C +
Sbjct: 204 WDNKPGTLCYDCEA 217
>gb|AAM14957.1| hypothetical protein [Arabidopsis thaliana]
Length = 273
Score = 77.8 bits (190), Expect(2) = 1e-14
Identities = 32/44 (72%), Positives = 41/44 (92%)
Frame = -3
Query: 517 QAGLLQNIKTDWKKVAVVNVIFLVFLIIVYSIGCCAFRNNRNDN 386
+AGLL N+K+ WKKVA+VN++FLVFLIIVYS+GCCAFRNN+ D+
Sbjct: 220 KAGLLDNVKSAWKKVAIVNIVFLVFLIIVYSVGCCAFRNNKRDD 263
Score = 23.5 bits (49), Expect(2) = 1e-14
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -1
Query: 561 WDNDPMLLCFNCHS 520
WDN LCF+C S
Sbjct: 205 WDNAKEKLCFDCQS 218
>ref|NP_179961.2| hypothetical protein; protein id: At2g23810.1, supported by cDNA:
gi_13272396 [Arabidopsis thaliana]
gi|7486260|pir||T02338 senescence-associated protein
homolog [imported] - Arabidopsis thaliana
gi|13272397|gb|AAK17137.1|AF325069_1 unknown protein
[Arabidopsis thaliana]
Length = 195
Score = 77.8 bits (190), Expect(2) = 1e-14
Identities = 32/44 (72%), Positives = 41/44 (92%)
Frame = -3
Query: 517 QAGLLQNIKTDWKKVAVVNVIFLVFLIIVYSIGCCAFRNNRNDN 386
+AGLL N+K+ WKKVA+VN++FLVFLIIVYS+GCCAFRNN+ D+
Sbjct: 142 KAGLLDNVKSAWKKVAIVNIVFLVFLIIVYSVGCCAFRNNKRDD 185
Score = 23.5 bits (49), Expect(2) = 1e-14
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -1
Query: 561 WDNDPMLLCFNCHS 520
WDN LCF+C S
Sbjct: 127 WDNAKEKLCFDCQS 140
>gb|AAO72638.1| senescence-associated protein-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 276
Score = 71.2 bits (173), Expect = 8e-12
Identities = 29/44 (65%), Positives = 38/44 (85%)
Frame = -3
Query: 517 QAGLLQNIKTDWKKVAVVNVIFLVFLIIVYSIGCCAFRNNRNDN 386
+AG + +K DWK+VAVV ++FLVF++IVYS+GCCAFRNNR DN
Sbjct: 219 KAGAVATLKRDWKRVAVVCIVFLVFIVIVYSLGCCAFRNNRRDN 262
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 482,250,749
Number of Sequences: 1393205
Number of extensions: 10250918
Number of successful extensions: 20595
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 20101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20593
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
