Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003026A_C01 KMC003026A_c01
(563 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191109.1| expansin, putative; protein id: At3g55500.1 [Ar... 161 5e-39
gb|AAK48848.1|AF350939_1 expansin [Prunus cerasus] 161 6e-39
ref|NP_181500.1| expansin, putative; protein id: At2g39700.1, su... 160 1e-38
gb|AAF35900.1|AF230331_1 expansin [Zinnia elegans] 159 2e-38
gb|AAL31477.1|AF319472_1 alpha-expansin 6 precursor [Cucumis sat... 157 7e-38
>ref|NP_191109.1| expansin, putative; protein id: At3g55500.1 [Arabidopsis thaliana]
gi|20138028|sp|Q9M2S9|EX16_ARATH Alpha-expansin 16
precursor (At-EXP16) (AtEx16) (Ath-ExpAlpha-1.7)
gi|11281292|pir||T47689 expansin-like protein -
Arabidopsis thaliana gi|7076793|emb|CAB75908.1|
expansin-like protein [Arabidopsis thaliana]
Length = 260
Score = 161 bits (408), Expect = 5e-39
Identities = 76/85 (89%), Positives = 81/85 (94%)
Frame = -1
Query: 563 YFNLVLITNVAGAGDIVRTSVKGSKTGWMSMSRNWGQNWQSNSVLVGQSLSFRVTASDRR 384
YFNLVLITNVAGAGDI RTSVKGSKTGWMS++RNWGQNWQSN+VLVGQSLSFRVT+SDRR
Sbjct: 176 YFNLVLITNVAGAGDIARTSVKGSKTGWMSLTRNWGQNWQSNAVLVGQSLSFRVTSSDRR 235
Query: 383 TSTSLNIVPSHWQFGQTFTGKNFRV 309
TSTS NI PS+WQFGQTF GKNFRV
Sbjct: 236 TSTSWNIAPSNWQFGQTFVGKNFRV 260
>gb|AAK48848.1|AF350939_1 expansin [Prunus cerasus]
Length = 260
Score = 161 bits (407), Expect = 6e-39
Identities = 76/85 (89%), Positives = 81/85 (94%)
Frame = -1
Query: 563 YFNLVLITNVAGAGDIVRTSVKGSKTGWMSMSRNWGQNWQSNSVLVGQSLSFRVTASDRR 384
YFNLVL++NVAGAGDIVR SVKGSKTGWMSMSRNWGQNWQSN+VLVGQSLSFRV SDRR
Sbjct: 176 YFNLVLVSNVAGAGDIVRVSVKGSKTGWMSMSRNWGQNWQSNAVLVGQSLSFRVRGSDRR 235
Query: 383 TSTSLNIVPSHWQFGQTFTGKNFRV 309
TSTS NIVP++WQFGQTFTGKNFRV
Sbjct: 236 TSTSWNIVPANWQFGQTFTGKNFRV 260
>ref|NP_181500.1| expansin, putative; protein id: At2g39700.1, supported by cDNA:
17353., supported by cDNA: gi_15294171, supported by
cDNA: gi_17065213, supported by cDNA: gi_20259979
[Arabidopsis thaliana] gi|20138158|sp|O48818|EXP4_ARATH
Alpha-expansin 4 precursor (At-EXP4) (AtEx4)
(Ath-ExpAlpha-1.6) gi|25344429|pir||D84820 probable
expansin [imported] - Arabidopsis thaliana
gi|2795809|gb|AAB97125.1| putative expansin [Arabidopsis
thaliana] gi|15294172|gb|AAK95263.1|AF410277_1
At2g39700/F17A14.7 [Arabidopsis thaliana]
gi|17065214|gb|AAL32761.1| putative expansin
[Arabidopsis thaliana] gi|20259980|gb|AAM13337.1|
putative expansin [Arabidopsis thaliana]
Length = 257
Score = 160 bits (404), Expect = 1e-38
Identities = 75/85 (88%), Positives = 81/85 (95%)
Frame = -1
Query: 563 YFNLVLITNVAGAGDIVRTSVKGSKTGWMSMSRNWGQNWQSNSVLVGQSLSFRVTASDRR 384
YFNLVLITNVAGAGDIVR SVKGS+TGWMS+SRNWGQNWQSN+VLVGQ+LSFRVT SDRR
Sbjct: 173 YFNLVLITNVAGAGDIVRASVKGSRTGWMSLSRNWGQNWQSNAVLVGQALSFRVTGSDRR 232
Query: 383 TSTSLNIVPSHWQFGQTFTGKNFRV 309
TSTS N+VPS+WQFGQTF GKNFRV
Sbjct: 233 TSTSWNMVPSNWQFGQTFVGKNFRV 257
>gb|AAF35900.1|AF230331_1 expansin [Zinnia elegans]
Length = 203
Score = 159 bits (403), Expect = 2e-38
Identities = 76/85 (89%), Positives = 80/85 (93%)
Frame = -1
Query: 563 YFNLVLITNVAGAGDIVRTSVKGSKTGWMSMSRNWGQNWQSNSVLVGQSLSFRVTASDRR 384
YFNLVLI+NVAGAGDI + VKGSKT WMSMSRNWGQNWQSN+VLVGQSLSFRVTASDRR
Sbjct: 119 YFNLVLISNVAGAGDIQKVWVKGSKTNWMSMSRNWGQNWQSNAVLVGQSLSFRVTASDRR 178
Query: 383 TSTSLNIVPSHWQFGQTFTGKNFRV 309
TSTS NIVP+HWQFGQTFTGKNFRV
Sbjct: 179 TSTSWNIVPAHWQFGQTFTGKNFRV 203
>gb|AAL31477.1|AF319472_1 alpha-expansin 6 precursor [Cucumis sativus]
Length = 259
Score = 157 bits (398), Expect = 7e-38
Identities = 73/85 (85%), Positives = 80/85 (93%)
Frame = -1
Query: 563 YFNLVLITNVAGAGDIVRTSVKGSKTGWMSMSRNWGQNWQSNSVLVGQSLSFRVTASDRR 384
YFNLVL+TNVAGAGDIV+ SVKG++TGWMSMSRNWGQNWQSN+VLVGQ+LSFRVT SDRR
Sbjct: 175 YFNLVLVTNVAGAGDIVKVSVKGTRTGWMSMSRNWGQNWQSNAVLVGQALSFRVTGSDRR 234
Query: 383 TSTSLNIVPSHWQFGQTFTGKNFRV 309
TSTS+N PS WQFGQTFTGKNFRV
Sbjct: 235 TSTSINGAPSDWQFGQTFTGKNFRV 259
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 502,992,732
Number of Sequences: 1393205
Number of extensions: 11100383
Number of successful extensions: 26348
Number of sequences better than 10.0: 270
Number of HSP's better than 10.0 without gapping: 25619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26305
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
