Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003024A_C04 KMC003024A_c04
(663 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P93508|CRTC_RICCO Calreticulin precursor gi|7441496|pir||T101... 176 3e-43
sp|Q9XF98|CRTC_PRUAR Calreticulin precursor gi|4887133|gb|AAD322... 167 2e-40
sp|Q40401|CRTC_NICPL Calreticulin precursor gi|7441495|pir||T169... 166 2e-40
sp|O81919|CRTC_BETVU Calreticulin precursor gi|7441494|pir||T145... 166 3e-40
ref|NP_176030.1| calreticulin (crt1); protein id: At1g56340.1, s... 163 2e-39
>sp|P93508|CRTC_RICCO Calreticulin precursor gi|7441496|pir||T10172 calreticulin - castor
bean gi|1658197|gb|AAB71419.1| calreticulin [Ricinus
communis] gi|1763297|gb|AAB71420.1| calreticulin
[Ricinus communis]
Length = 415
Score = 176 bits (445), Expect = 3e-43
Identities = 85/113 (75%), Positives = 98/113 (86%)
Frame = -3
Query: 661 LYVYPKLKYVGIELWQVKSGTLFDNVLITDDPEYAKQVAEETWGKQKDAEKAAFEEAEKK 482
+YVYP LKYVGIELWQVKSGTLFDNVLI +DPEYAKQ+AEETWGK KDAEKAAFEEAEKK
Sbjct: 307 IYVYPNLKYVGIELWQVKSGTLFDNVLICNDPEYAKQLAEETWGKNKDAEKAAFEEAEKK 366
Query: 481 REEEESKEDPADSDAEDEEDTDEASHDSDDAESKTEAGEDSADAHEEDVHDEL 323
+EEEESK+DPADSDA++++D + + DD ESK++A EDSA EDVHDEL
Sbjct: 367 KEEEESKDDPADSDADEDDDDADDTEGEDDGESKSDAAEDSA----EDVHDEL 415
>sp|Q9XF98|CRTC_PRUAR Calreticulin precursor gi|4887133|gb|AAD32207.1|AF134733_1
calcium-binding protein calreticulin [Prunus armeniaca]
Length = 421
Score = 167 bits (422), Expect = 2e-40
Identities = 83/113 (73%), Positives = 97/113 (85%)
Frame = -3
Query: 661 LYVYPKLKYVGIELWQVKSGTLFDNVLITDDPEYAKQVAEETWGKQKDAEKAAFEEAEKK 482
LYVYP LKYVGIELWQVKSGTLFDN+LITD+PEYAKQ+AEETWGKQKDAEKAAFEE EKK
Sbjct: 311 LYVYPNLKYVGIELWQVKSGTLFDNILITDEPEYAKQLAEETWGKQKDAEKAAFEELEKK 370
Query: 481 REEEESKEDPADSDAEDEEDTDEASHDSDDAESKTEAGEDSADAHEEDVHDEL 323
+EEESKEDP DSDAED+++ E +S D+ESK ++ E+SA+ E + HDEL
Sbjct: 371 LQEEESKEDPVDSDAEDDDNEAEDGEES-DSESKPDSTEESAET-EAEKHDEL 421
>sp|Q40401|CRTC_NICPL Calreticulin precursor gi|7441495|pir||T16968 calreticulin cal1 -
curled-leaved tobacco gi|1419088|emb|CAA95999.1|
calreticulin [Nicotiana plumbaginifolia]
Length = 416
Score = 166 bits (421), Expect = 2e-40
Identities = 82/113 (72%), Positives = 95/113 (83%)
Frame = -3
Query: 661 LYVYPKLKYVGIELWQVKSGTLFDNVLITDDPEYAKQVAEETWGKQKDAEKAAFEEAEKK 482
LYV+PKLKYVG+ELWQVKSGTLFDN++I DDPEYAK +AEETWGKQKDAEKAAFEEAEKK
Sbjct: 314 LYVFPKLKYVGVELWQVKSGTLFDNIVICDDPEYAKAIAEETWGKQKDAEKAAFEEAEKK 373
Query: 481 REEEESKEDPADSDAEDEEDTDEASHDSDDAESKTEAGEDSADAHEEDVHDEL 323
REEEESK PADSDAE+++D D+ DSDDA+ K+E+ +D A HDEL
Sbjct: 374 REEEESKAAPADSDAEEDDDADD---DSDDADDKSESKDDEA-------HDEL 416
>sp|O81919|CRTC_BETVU Calreticulin precursor gi|7441494|pir||T14554 calreticulin - beet
gi|3288109|emb|CAA05161.1| calreticulin [Beta vulgaris]
Length = 416
Score = 166 bits (420), Expect = 3e-40
Identities = 79/113 (69%), Positives = 92/113 (80%)
Frame = -3
Query: 661 LYVYPKLKYVGIELWQVKSGTLFDNVLITDDPEYAKQVAEETWGKQKDAEKAAFEEAEKK 482
LYVYPKL+YVG+ELWQVKSGTLFDNVL+ DDPEYAKQ+AEETWGKQKDAEKAAFEE EKK
Sbjct: 312 LYVYPKLRYVGVELWQVKSGTLFDNVLVCDDPEYAKQLAEETWGKQKDAEKAAFEELEKK 371
Query: 481 REEEESKEDPADSDAEDEEDTDEASHDSDDAESKTEAGEDSADAHEEDVHDEL 323
REEEE+K+DP +SDAEDE++ + D DDA D +D ++D HDEL
Sbjct: 372 REEEETKDDPVESDAEDEDEAEADDSDKDDA--------DKSDDKDDDQHDEL 416
>ref|NP_176030.1| calreticulin (crt1); protein id: At1g56340.1, supported by cDNA:
gi_17065103, supported by cDNA: gi_2052378 [Arabidopsis
thaliana] gi|11131540|sp|O04151|CRT1_ARATH Calreticulin
1 precursor gi|25295764|pir||C96605 calreticulin (Crt1)
[imported] - Arabidopsis thaliana
gi|2052379|gb|AAC49695.1| calreticulin
gi|12321748|gb|AAG50908.1|AC069159_9 calreticulin (crt1)
[Arabidopsis thaliana]
gi|12323027|gb|AAG51504.1|AC058785_7 calreticulin (Crt1)
[Arabidopsis thaliana] gi|17065104|gb|AAL32706.1|
calreticulin (Crt1) [Arabidopsis thaliana]
Length = 425
Score = 163 bits (412), Expect = 2e-39
Identities = 80/117 (68%), Positives = 97/117 (82%), Gaps = 4/117 (3%)
Frame = -3
Query: 661 LYVYPKLKYVGIELWQVKSGTLFDNVLITDDPEYAKQVAEETWGKQKDAEKAAFEEAEKK 482
LYV+PKLKYVG+ELWQVKSG+LFDNVL++DDPEYAK++AEETWGK KDAEKAAF+EAEKK
Sbjct: 309 LYVFPKLKYVGVELWQVKSGSLFDNVLVSDDPEYAKKLAEETWGKHKDAEKAAFDEAEKK 368
Query: 481 REEEESKEDPADSDAEDEEDTDEASHDSDDAESK---TEAGEDSADAHEED-VHDEL 323
REEEESK+ PA+SDAE+E + D+ D D ESK T+ E++ +A E D HDEL
Sbjct: 369 REEEESKDAPAESDAEEEAEDDDNEGDDSDNESKSEETKEAEETKEAEETDAAHDEL 425
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 485,994,271
Number of Sequences: 1393205
Number of extensions: 9728811
Number of successful extensions: 193621
Number of sequences better than 10.0: 5400
Number of HSP's better than 10.0 without gapping: 69517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132475
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28572683052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
