Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003019A_C02 KMC003019A_c02
(583 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200128.1| putative protein; protein id: At5g53160.1 [Arab... 75 6e-13
pir||A86144 hypothetical protein F6F3.16 - Arabidopsis thaliana ... 70 2e-11
gb|AAM65514.1| unknown [Arabidopsis thaliana] 70 2e-11
ref|NP_563626.1| expressed protein; protein id: At1g01360.1, sup... 70 2e-11
gb|AAM65054.1| unknown [Arabidopsis thaliana] 66 3e-10
>ref|NP_200128.1| putative protein; protein id: At5g53160.1 [Arabidopsis thaliana]
gi|9757997|dbj|BAB08419.1|
gene_id:MFH8.10~pir||T02893~similar to unknown protein
[Arabidopsis thaliana] gi|27808528|gb|AAO24544.1|
At5g53160 [Arabidopsis thaliana]
Length = 188
Score = 75.1 bits (183), Expect = 6e-13
Identities = 35/39 (89%), Positives = 37/39 (94%)
Frame = -2
Query: 582 VPEGNTKDETCYFVEALIKCNLKSLADVSEGLALQDRTE 466
VPEGNTKDETCYFVEALIKCNLKSLAD+SE LA+QD TE
Sbjct: 147 VPEGNTKDETCYFVEALIKCNLKSLADISERLAVQDTTE 185
>pir||A86144 hypothetical protein F6F3.16 - Arabidopsis thaliana
gi|9665155|gb|AAF97339.1|AC023628_20 Unknown protein
[Arabidopsis thaliana]
Length = 186
Score = 70.1 bits (170), Expect = 2e-11
Identities = 33/39 (84%), Positives = 36/39 (91%)
Frame = -2
Query: 582 VPEGNTKDETCYFVEALIKCNLKSLADVSEGLALQDRTE 466
VP+GNTKDETCYFVEALI+CNLKSLADVSE LA QD T+
Sbjct: 148 VPQGNTKDETCYFVEALIRCNLKSLADVSERLASQDITQ 186
>gb|AAM65514.1| unknown [Arabidopsis thaliana]
Length = 186
Score = 70.1 bits (170), Expect = 2e-11
Identities = 33/39 (84%), Positives = 36/39 (91%)
Frame = -2
Query: 582 VPEGNTKDETCYFVEALIKCNLKSLADVSEGLALQDRTE 466
VP+GNTKDETCYFVEALI+CNLKSLADVSE LA QD T+
Sbjct: 148 VPQGNTKDETCYFVEALIRCNLKSLADVSERLASQDITQ 186
>ref|NP_563626.1| expressed protein; protein id: At1g01360.1, supported by cDNA:
3998. [Arabidopsis thaliana]
Length = 187
Score = 70.1 bits (170), Expect = 2e-11
Identities = 33/39 (84%), Positives = 36/39 (91%)
Frame = -2
Query: 582 VPEGNTKDETCYFVEALIKCNLKSLADVSEGLALQDRTE 466
VP+GNTKDETCYFVEALI+CNLKSLADVSE LA QD T+
Sbjct: 149 VPQGNTKDETCYFVEALIRCNLKSLADVSERLASQDITQ 187
>gb|AAM65054.1| unknown [Arabidopsis thaliana]
Length = 209
Score = 66.2 bits (160), Expect = 3e-10
Identities = 32/41 (78%), Positives = 35/41 (85%)
Frame = -2
Query: 582 VPEGNTKDETCYFVEALIKCNLKSLADVSEGLALQDRTEPI 460
VP+GNTKD+TCYFVE+LIKCNLKSLA VSE LA QD T I
Sbjct: 149 VPQGNTKDDTCYFVESLIKCNLKSLACVSERLAAQDITNSI 189
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 459,681,801
Number of Sequences: 1393205
Number of extensions: 9146068
Number of successful extensions: 21902
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 21419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21895
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
