Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003018A_C01 KMC003018A_c01
(541 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_206590.1| hypothetical protein XP_206590 [Mus musculus] 32 4.9
ref|NP_501963.1| PaTched Related PTR-14 (ptr-14) [Caenorhabditis... 32 4.9
ref|NP_783290.1| ycf1 protein [Atropa belladonna] gi|20068391|em... 31 8.4
ref|NP_473170.1| hypothetical protein, conserved [Plasmodium fal... 31 8.4
>ref|XP_206590.1| hypothetical protein XP_206590 [Mus musculus]
Length = 243
Score = 32.0 bits (71), Expect = 4.9
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +1
Query: 313 SRTPMIN*FSRSMNIETGLNKVVNKNQNLFPSFPFSFDLKDYHDN 447
++ PM++ S+ +E LNK+ N+ Q+ FPSF + + H N
Sbjct: 17 AKFPMLS----SVGVEENLNKIPNEKQHSFPSFKEGLEPSEKHTN 57
>ref|NP_501963.1| PaTched Related PTR-14 (ptr-14) [Caenorhabditis elegans]
gi|7506536|pir||T24097 hypothetical protein R09H10.4 -
Caenorhabditis elegans gi|3879091|emb|CAB00873.1| C.
elegans PTR-14 protein (corresponding sequence R09H10.4)
[Caenorhabditis elegans]
Length = 877
Score = 32.0 bits (71), Expect = 4.9
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Frame = -1
Query: 445 CHDSPLNRRKMERKEKGFGFYLQLCLALFQCSCFWKIN*SSE----FCYFIYVTILIRQT 278
C + + + +RK+ G F + + C W N + FC+ +Y+ + IR
Sbjct: 424 CENLEMRKNATKRKDSGLSFKNEQFTVMLDSYCDWVANAYTHLLVLFCFIVYIFVSIRGA 483
Query: 277 SMVNI 263
+NI
Sbjct: 484 LNINI 488
>ref|NP_783290.1| ycf1 protein [Atropa belladonna] gi|20068391|emb|CAC88104.1| ycf1
protein [Atropa belladonna]
Length = 1880
Score = 31.2 bits (69), Expect = 8.4
Identities = 21/59 (35%), Positives = 31/59 (51%), Gaps = 5/59 (8%)
Frame = +3
Query: 18 SDNKRNPDSKKYN*MRELIL-----RYLIFQKRNSTANSDSSHFMLQRIKEYCPILVLL 179
SD K++ K+Y E L RYL+FQ + N D + M++ IK YC +L L+
Sbjct: 1612 SDTKKSKKKKQYKSNTEAELDLFLKRYLLFQLK---WNDDLNQRMIENIKVYCLLLRLI 1667
>ref|NP_473170.1| hypothetical protein, conserved [Plasmodium falciparum 3D7]
gi|4493884|emb|CAB38993.1| hypothetical protein,
conserved [Plasmodium falciparum 3D7]
Length = 525
Score = 31.2 bits (69), Expect = 8.4
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 328 IN*FSRSMNIETGLNKVVNKNQNLFPSFPFSFDLKDYHDNVLPSN 462
+N F+ + NI + +++ N N PS + + K +HDNV+ N
Sbjct: 433 LNQFNPNDNINNNMEHIIHHNNNNIPS---NVNFKSFHDNVITHN 474
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 418,221,669
Number of Sequences: 1393205
Number of extensions: 8222907
Number of successful extensions: 18210
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18209
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
