Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003017A_C01 KMC003017A_c01
(500 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187997.1| zinc finger protein, putative; protein id: At3g... 65 4e-10
pir||S48856 finger protein pcp1 - potato gi|563623|emb|CAA57772.... 52 5e-06
dbj|BAB16868.1| putative zinc finger protein [Oryza sativa (japo... 48 5e-05
dbj|BAB91787.1| putative zinc finger protein [Oryza sativa (japo... 41 0.007
gb|AAM14021.1| putative zinc finger protein [Arabidopsis thaliana] 38 0.073
>ref|NP_187997.1| zinc finger protein, putative; protein id: At3g13810.1, supported
by cDNA: gi_13605632, supported by cDNA: gi_20147150
[Arabidopsis thaliana] gi|9294603|dbj|BAB02904.1|
contains similarity to zinc finger
protein~gene_id:MCP4.2 [Arabidopsis thaliana]
gi|13605633|gb|AAK32810.1|AF361797_1 AT3g13810/MCP4_2
[Arabidopsis thaliana] gi|20147151|gb|AAM10292.1|
AT3g13810/MCP4_2 [Arabidopsis thaliana]
Length = 513
Score = 65.1 bits (157), Expect = 4e-10
Identities = 43/102 (42%), Positives = 62/102 (60%), Gaps = 10/102 (9%)
Frame = -2
Query: 433 MTTTTAAAATTG---VSTSFLHHVM--DSFPSGFEG----TSFEDTFGPGGILNSNHQDI 281
+TTT AA T+ +S++ +HV+ D SGF+ +F+DTFG G L +N
Sbjct: 399 LTTTMAAMMTSPSGFISSNNNNHVLFQDYNASGFDNHGREEAFDDTFG--GFLRTNEVTA 456
Query: 280 DSITTSVVKGGNNEGLTRDFLGLRPL-SHSDILTLASMGNCM 158
+ + K G EGLTRDFLGLRPL SH++IL+ A +G+C+
Sbjct: 457 AAGSEKSTKSGGGEGLTRDFLGLRPLMSHNEILSFAGLGSCI 498
>pir||S48856 finger protein pcp1 - potato gi|563623|emb|CAA57772.1| putative
DNA/RNA binding protein [Solanum tuberosum]
Length = 509
Score = 51.6 bits (122), Expect = 5e-06
Identities = 42/107 (39%), Positives = 57/107 (53%), Gaps = 7/107 (6%)
Frame = -2
Query: 463 LSTCEDQMVTMTTTTAAAATTGVSTSFLHHVMDSFPSGFEG-TSFEDTFGPGGI--LNSN 293
LS+ ED +T+ T A +G+ TSF +GF+G T FED GG LNS
Sbjct: 401 LSSRED----LTSITGPANISGIMTSF--------SNGFDGSTMFEDAILFGGFNNLNSK 448
Query: 292 HQDIDSITTSVVKGGNNEG---LTRDFLGLRPLSHS-DILTLASMGN 164
+D + G NE LT+DFLGL+PLSH+ DI +A++ N
Sbjct: 449 KEDEEEDQQLYFNGSMNEEDHILTKDFLGLKPLSHTDDIFNIAALVN 495
>dbj|BAB16868.1| putative zinc finger protein [Oryza sativa (japonica
cultivar-group)] gi|14646771|dbj|BAB61934.1| putative
zinc finger protein [Oryza sativa (japonica
cultivar-group)]
Length = 514
Score = 48.1 bits (113), Expect = 5e-05
Identities = 28/71 (39%), Positives = 38/71 (53%)
Frame = -2
Query: 355 SGFEGTSFEDTFGPGGILNSNHQDIDSITTSVVKGGNNEGLTRDFLGLRPLSHSDILTLA 176
+G G +FE + +S D T + V G N+GLTRDFLGLR SH +I+++A
Sbjct: 426 AGGYGLAFEASHFIAADESSRGARSDRDTGNGVAGAGNDGLTRDFLGLRAFSHGNIMSMA 485
Query: 175 SMGNCMKP*SA 143
CM SA
Sbjct: 486 GFDPCMSTTSA 496
>dbj|BAB91787.1| putative zinc finger protein [Oryza sativa (japonica
cultivar-group)] gi|20521379|dbj|BAB91890.1| putative
zinc finger protein [Oryza sativa (japonica
cultivar-group)]
Length = 449
Score = 41.2 bits (95), Expect = 0.007
Identities = 18/32 (56%), Positives = 21/32 (65%)
Frame = -2
Query: 253 GGNNEGLTRDFLGLRPLSHSDILTLASMGNCM 158
GG +G+TRDFLGLR SH DIL +CM
Sbjct: 370 GGGGDGMTRDFLGLRAFSHRDILLAGFDSSCM 401
>gb|AAM14021.1| putative zinc finger protein [Arabidopsis thaliana]
Length = 455
Score = 37.7 bits (86), Expect = 0.073
Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Frame = -2
Query: 433 MTTTTAAAATTGVSTSFL---HHVMDSFPSGFEGTSFEDTFGPGGILNSNHQDIDSITTS 263
+TTT AA T+ F +++M+ G G +F F PG N
Sbjct: 357 ITTTMAAMMTSPPEPGFGFQDYYMMNHQHHG-GGEAFNGGFVPGEEKND----------- 404
Query: 262 VVKGGNNEGLTRDFLGLRPL-SHSDILTLA-SMGNCM 158
VV G E TRDFLGLR L SH++IL+ A ++GNC+
Sbjct: 405 VVDDGGGE--TRDFLGLRSLMSHNEILSFANNLGNCL 439
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 475,776,730
Number of Sequences: 1393205
Number of extensions: 11235677
Number of successful extensions: 32992
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 30717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32842
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
