Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003014A_C01 KMC003014A_c01
(509 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM92303.1| unknown protein [Oryza sativa (japonica cultivar-... 108 3e-23
ref|NP_567108.1| putative protein; protein id: At3g61060.1, supp... 107 1e-22
pir||T50527 hypothetical protein T27I15_150 - Arabidopsis thalia... 107 1e-22
gb|AAK59472.2| unknown protein [Arabidopsis thaliana] 105 4e-22
ref|NP_200025.1| putative protein; protein id: At5g52120.1, supp... 103 1e-21
>gb|AAM92303.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 310
Score = 108 bits (271), Expect = 3e-23
Identities = 49/75 (65%), Positives = 56/75 (74%)
Frame = -1
Query: 509 DIKPVRFQLSTSDGQSSLSQSYLRGPGEWAFYHVGDFAIERPNVSTNIKFSLAQIDCTHT 330
D KPVRFQLSTSDGQ SLSQ L PG W YH GDF + +P+ + +KFS+AQIDCTHT
Sbjct: 222 DKKPVRFQLSTSDGQHSLSQCSLGEPGSWVLYHAGDFVVSKPDQTIKLKFSMAQIDCTHT 281
Query: 329 KGGLCIDGAVICPTG 285
KGGLC+D A I P G
Sbjct: 282 KGGLCVDSAFIYPKG 296
>ref|NP_567108.1| putative protein; protein id: At3g61060.1, supported by cDNA:
gi_14334587 [Arabidopsis thaliana]
Length = 254
Score = 107 bits (266), Expect = 1e-22
Identities = 49/74 (66%), Positives = 57/74 (76%), Gaps = 1/74 (1%)
Frame = -1
Query: 509 DIKPVRFQLSTSDGQSSLSQSYLRG-PGEWAFYHVGDFAIERPNVSTNIKFSLAQIDCTH 333
DIKPVRFQL+TSD Q ++S YL PG W+ YHVGDF + P+VST IKFS+ QIDCTH
Sbjct: 170 DIKPVRFQLATSDNQQAVSLCYLNNNPGSWSHYHVGDFKVTNPDVSTGIKFSMTQIDCTH 229
Query: 332 TKGGLCIDGAVICP 291
TKGGLCID +I P
Sbjct: 230 TKGGLCIDSVLILP 243
>pir||T50527 hypothetical protein T27I15_150 - Arabidopsis thaliana
gi|8388622|emb|CAB94142.1| putative protein [Arabidopsis
thaliana] gi|24030237|gb|AAN41295.1| unknown protein
[Arabidopsis thaliana]
Length = 290
Score = 107 bits (266), Expect = 1e-22
Identities = 49/74 (66%), Positives = 57/74 (76%), Gaps = 1/74 (1%)
Frame = -1
Query: 509 DIKPVRFQLSTSDGQSSLSQSYLRG-PGEWAFYHVGDFAIERPNVSTNIKFSLAQIDCTH 333
DIKPVRFQL+TSD Q ++S YL PG W+ YHVGDF + P+VST IKFS+ QIDCTH
Sbjct: 206 DIKPVRFQLATSDNQQAVSLCYLNNNPGSWSHYHVGDFKVTNPDVSTGIKFSMTQIDCTH 265
Query: 332 TKGGLCIDGAVICP 291
TKGGLCID +I P
Sbjct: 266 TKGGLCIDSVLILP 279
>gb|AAK59472.2| unknown protein [Arabidopsis thaliana]
Length = 269
Score = 105 bits (261), Expect = 4e-22
Identities = 48/74 (64%), Positives = 56/74 (74%), Gaps = 1/74 (1%)
Frame = -1
Query: 509 DIKPVRFQLSTSDGQSSLSQSYLRG-PGEWAFYHVGDFAIERPNVSTNIKFSLAQIDCTH 333
D KPVRFQL+TSD Q ++S YL PG W+ YHVGDF + P+VST IKFS+ QIDCTH
Sbjct: 185 DTKPVRFQLATSDNQQAVSLCYLNNNPGSWSHYHVGDFKVTNPDVSTGIKFSMTQIDCTH 244
Query: 332 TKGGLCIDGAVICP 291
TKGGLCID +I P
Sbjct: 245 TKGGLCIDSVLILP 258
>ref|NP_200025.1| putative protein; protein id: At5g52120.1, supported by cDNA:
gi_18175687, supported by cDNA: gi_20465820 [Arabidopsis
thaliana] gi|18175688|gb|AAL59911.1| unknown protein
[Arabidopsis thaliana] gi|20465821|gb|AAM20015.1|
unknown protein [Arabidopsis thaliana]
Length = 291
Score = 103 bits (257), Expect = 1e-21
Identities = 44/73 (60%), Positives = 55/73 (75%)
Frame = -1
Query: 509 DIKPVRFQLSTSDGQSSLSQSYLRGPGEWAFYHVGDFAIERPNVSTNIKFSLAQIDCTHT 330
DIKPVRFQLSTSDGQ ++S+ +L G W ++H GDF +E N +KFS+ QIDCTHT
Sbjct: 208 DIKPVRFQLSTSDGQCAMSERHLDESGRWVYHHAGDFVVENQNSPVWVKFSMLQIDCTHT 267
Query: 329 KGGLCIDGAVICP 291
KGGLC+D +ICP
Sbjct: 268 KGGLCLDCVIICP 280
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 428,597,601
Number of Sequences: 1393205
Number of extensions: 8816966
Number of successful extensions: 22374
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 21509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22305
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
