Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003011A_C01 KMC003011A_c01
(581 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_230409.1| similar to olfactory receptor MOR248-8 [Mus mus... 34 1.5
ref|XP_230401.1| similar to olfactory receptor MOR248-9 [Mus mus... 33 2.0
ref|XP_205074.1| similar to olfactory receptor MOR248-8 [Mus mus... 33 2.6
ref|XP_230410.1| similar to olfactory receptor MOR248-8 [Mus mus... 33 2.6
gb|AAG41199.1| lin-14A [Caenorhabditis briggsae] 32 7.6
>ref|XP_230409.1| similar to olfactory receptor MOR248-8 [Mus musculus] [Rattus
norvegicus]
Length = 267
Score = 33.9 bits (76), Expect = 1.5
Identities = 17/41 (41%), Positives = 28/41 (67%), Gaps = 3/41 (7%)
Frame = +1
Query: 454 QLKCGKSH---LLINSNCSIVEVN*FLLLTLSFPLIIMTGH 567
+L C SH +L+N++C IV V+ F+LL +S+ I++T H
Sbjct: 141 KLACIDSHDLDMLMNADCGIVVVSCFILLLISYTYILVTVH 181
>ref|XP_230401.1| similar to olfactory receptor MOR248-9 [Mus musculus] [Rattus
norvegicus]
Length = 235
Score = 33.5 bits (75), Expect = 2.0
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 8/50 (16%)
Frame = +1
Query: 454 QLKCGKSH---LLINSNCSIVEVN*FLLLTLSFPLIIMTG-----HSAWW 579
+L C +S +L+N++C +V V F+LL +S+ I++TG +WW
Sbjct: 186 KLACMESRDLDILMNTDCGLVAVTCFILLLISYTYILITGAKHHEGKSWW 235
>ref|XP_205074.1| similar to olfactory receptor MOR248-8 [Mus musculus]
Length = 297
Score = 33.1 bits (74), Expect = 2.6
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Frame = +1
Query: 457 LKCGKSH---LLINSNCSIVEVN*FLLLTLSFPLIIMTGHSA 573
L C SH L+N++C +V V F+LL +S+ I++T H +
Sbjct: 172 LACMDSHHLDTLVNADCGVVVVTCFILLLISYTYILITVHQS 213
>ref|XP_230410.1| similar to olfactory receptor MOR248-8 [Mus musculus] [Rattus
norvegicus]
Length = 329
Score = 33.1 bits (74), Expect = 2.6
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Frame = +1
Query: 457 LKCGKSH---LLINSNCSIVEVN*FLLLTLSFPLIIMTGHSA 573
L C SH L+N++C +V V F+LL +S+ I++T H +
Sbjct: 187 LACMDSHDLDTLVNADCGVVVVTCFILLLISYTYILITVHQS 228
>gb|AAG41199.1| lin-14A [Caenorhabditis briggsae]
Length = 544
Score = 31.6 bits (70), Expect = 7.6
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +1
Query: 100 NWPVKGEIVIQHLCTTTLY-RFKNKISIWE 186
N P+KG IQH+C LY +F+N+ W+
Sbjct: 388 NLPIKGICYIQHVCRKVLYDKFENEEDFWD 417
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 437,926,291
Number of Sequences: 1393205
Number of extensions: 8319352
Number of successful extensions: 16847
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16844
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
