Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003007A_C01 KMC003007A_c01
(534 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB89638.1| P0468B07.17 [Oryza sativa (japonica cultivar-gro... 199 2e-50
ref|NP_191595.1| putative protein; protein id: At3g60360.1, supp... 176 2e-43
ref|XP_233498.1| similar to RIKEN cDNA 2700082D03 [Mus musculus]... 115 3e-25
gb|AAH49053.1| Similar to CGI-94 protein [Danio rerio] 115 3e-25
ref|NP_080307.1| RIKEN cDNA 2700082D03 [Mus musculus] gi|1284936... 113 1e-24
>dbj|BAB89638.1| P0468B07.17 [Oryza sativa (japonica cultivar-group)]
Length = 214
Score = 199 bits (505), Expect = 2e-50
Identities = 92/132 (69%), Positives = 115/132 (86%)
Frame = +3
Query: 135 MSSLRNALPRRAHKERAQPSSRKKFGHLEKHKDYVERAKAFHKKEETLRILREKAANRNQ 314
MSSLRNA+ RRAHKERAQP SRKKFG LEKHKDY+ RAKAFH+KEET+R L+EKA+ RN
Sbjct: 1 MSSLRNAIQRRAHKERAQPESRKKFGLLEKHKDYIVRAKAFHQKEETIRKLKEKASFRNP 60
Query: 315 DEFYFKMIRTRTEDGVHRPESEANKYTQDELMWMKTQDLGYVLQKLQSERKKMEKLAASS 494
DEFYFKMI ++T DG+HRP+ EANKYT+DELM +KT+D+GY+LQ +QSE+KK+EKL++
Sbjct: 61 DEFYFKMINSKTVDGIHRPKPEANKYTEDELMLLKTKDMGYILQGIQSEKKKIEKLSSML 120
Query: 495 HSIDNQPTNKHI 530
H +DN+ NKH+
Sbjct: 121 HELDNKRPNKHV 132
>ref|NP_191595.1| putative protein; protein id: At3g60360.1, supported by cDNA:
13387., supported by cDNA: gi_14532503, supported by
cDNA: gi_20855864 [Arabidopsis thaliana]
gi|11281657|pir||T47847 hypothetical protein T8B10.20 -
Arabidopsis thaliana gi|7287984|emb|CAB81822.1| putative
protein [Arabidopsis thaliana]
gi|14532504|gb|AAK63980.1| AT3g60360/T8B10_20
[Arabidopsis thaliana] gi|20855865|gb|AAM26635.1|
AT3g60360/T8B10_20 [Arabidopsis thaliana]
gi|21537368|gb|AAM61709.1| unknown [Arabidopsis
thaliana] gi|23397168|gb|AAN31867.1| unknown protein
[Arabidopsis thaliana]
Length = 228
Score = 176 bits (445), Expect = 2e-43
Identities = 83/132 (62%), Positives = 106/132 (79%)
Frame = +3
Query: 135 MSSLRNALPRRAHKERAQPSSRKKFGHLEKHKDYVERAKAFHKKEETLRILREKAANRNQ 314
MSSLRNA+PR AHKER+QP +RK+FG LEKHKDY+ RA A+HKK+ETL+ILR+KAA +N
Sbjct: 1 MSSLRNAIPRPAHKERSQPEARKRFGILEKHKDYIIRANAYHKKQETLKILRQKAAFKNP 60
Query: 315 DEFYFKMIRTRTEDGVHRPESEANKYTQDELMWMKTQDLGYVLQKLQSERKKMEKLAASS 494
DEF FKMI ++T DG HRP+ E NKY+ +ELM MKTQD+GYV QK QSE+ K++KL AS
Sbjct: 61 DEFNFKMINSKTVDGRHRPKDEVNKYSAEELMIMKTQDIGYVFQKWQSEKNKIDKLTASL 120
Query: 495 HSIDNQPTNKHI 530
+Q + +H+
Sbjct: 121 QCTGDQSSRRHV 132
>ref|XP_233498.1| similar to RIKEN cDNA 2700082D03 [Mus musculus] [Rattus norvegicus]
Length = 253
Score = 115 bits (289), Expect = 3e-25
Identities = 57/125 (45%), Positives = 82/125 (65%), Gaps = 2/125 (1%)
Frame = +3
Query: 162 RRAHKERAQPSSRKKFGHLEKHKDYVERAKAFHKKEETLRILREKAANRNQDEFYFKMIR 341
+R H+ER+QP RK+ G LEK KDY RA +HKK++ LR LR+KA +N DEFY+KM R
Sbjct: 13 QREHRERSQPGFRKRLGLLEKKKDYKLRANDYHKKQDFLRALRKKALEKNPDEFYYKMTR 72
Query: 342 TRTEDGVHRPESEANKYTQDELMWMKTQDLGYVLQKLQSERKKMEKLAASSHSIDNQ--P 515
+ +DGVH + + T ++L M+TQD+ Y+ K +E KK+E+L + H +D Q
Sbjct: 73 AKLQDGVHIFKDNKEEVTAEQLKLMRTQDIKYIEMKRVAEAKKIERLKSELHLLDVQGKQ 132
Query: 516 TNKHI 530
NKH+
Sbjct: 133 QNKHV 137
>gb|AAH49053.1| Similar to CGI-94 protein [Danio rerio]
Length = 250
Score = 115 bits (289), Expect = 3e-25
Identities = 61/134 (45%), Positives = 86/134 (63%), Gaps = 2/134 (1%)
Frame = +3
Query: 135 MSSLRNALP--RRAHKERAQPSSRKKFGHLEKHKDYVERAKAFHKKEETLRILREKAANR 308
MSS R AL +R HKER+Q RK G LEK KDY RA +H+KE+T+ LR+KA ++
Sbjct: 1 MSSFRKALKSKQRDHKERSQLGFRKHLGLLEKKKDYKLRADDYHRKEKTILALRKKAMDK 60
Query: 309 NQDEFYFKMIRTRTEDGVHRPESEANKYTQDELMWMKTQDLGYVLQKLQSERKKMEKLAA 488
N DEF FKMI + +DGVH + + T+++ M+TQD+ YV K SE KK+E++ +
Sbjct: 61 NPDEFNFKMIHNQLKDGVHMAIRKDEEMTEEQKKVMRTQDIRYVEMKRVSEMKKIERMKS 120
Query: 489 SSHSIDNQPTNKHI 530
H +D + NKH+
Sbjct: 121 ELHFLDEKKKNKHV 134
>ref|NP_080307.1| RIKEN cDNA 2700082D03 [Mus musculus] gi|12849364|dbj|BAB28310.1|
unnamed protein product [Mus musculus]
Length = 253
Score = 113 bits (283), Expect = 1e-24
Identities = 56/125 (44%), Positives = 81/125 (64%), Gaps = 2/125 (1%)
Frame = +3
Query: 162 RRAHKERAQPSSRKKFGHLEKHKDYVERAKAFHKKEETLRILREKAANRNQDEFYFKMIR 341
+R H+ER+QP RK+ G LEK KDY RA +HKK++ LR LR+KA +N DEFY+KM R
Sbjct: 13 QREHRERSQPGFRKRLGLLEKKKDYKLRANDYHKKQDFLRALRKKALEKNPDEFYYKMTR 72
Query: 342 TRTEDGVHRPESEANKYTQDELMWMKTQDLGYVLQKLQSERKKMEKLAASSHSIDNQ--P 515
+ +DGVH + + T ++L M+TQD+ Y+ K +E KK+E+L + H +D Q
Sbjct: 73 AKLQDGVHIFKENKEEVTAEQLKLMRTQDIKYIEMKRVAEAKKIERLKSELHLLDFQGKQ 132
Query: 516 TNKHI 530
KH+
Sbjct: 133 QKKHV 137
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 463,667,050
Number of Sequences: 1393205
Number of extensions: 9873712
Number of successful extensions: 43192
Number of sequences better than 10.0: 95
Number of HSP's better than 10.0 without gapping: 36418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42455
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
