Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003005A_C01 KMC003005A_c01
(593 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198012.1| putative protein; protein id: At5g26595.1 [Arab... 83 3e-15
dbj|BAA96581.1| unnamed protein product [Oryza sativa (japonica ... 66 3e-10
dbj|BAA96579.1| unnamed protein product [Oryza sativa (japonica ... 62 7e-09
ref|NP_191772.1| putative protein; protein id: At3g62130.1, supp... 59 4e-08
ref|NP_681313.1| D-alanine:D-alanine ligase [Thermosynechococcus... 32 6.1
>ref|NP_198012.1| putative protein; protein id: At5g26595.1 [Arabidopsis thaliana]
Length = 475
Score = 82.8 bits (203), Expect = 3e-15
Identities = 35/58 (60%), Positives = 45/58 (77%)
Frame = -3
Query: 588 FGVEVPIYYRPPRDGEVEPVTGYARISHQVYNKVDDYYKFRDAVIQLVDKGFTCALLS 415
F +E+PIY+RPP DGE++P+TGY RIS QVYNK +DY++ RDA+ LV GF C LS
Sbjct: 417 FRIEIPIYFRPPGDGEIDPITGYVRISFQVYNKPEDYHRLRDAINGLVRDGFKCTSLS 474
>dbj|BAA96581.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
gi|8468010|dbj|BAA96610.1| unnamed protein product
[Oryza sativa (japonica cultivar-group)]
Length = 476
Score = 66.2 bits (160), Expect = 3e-10
Identities = 36/68 (52%), Positives = 42/68 (60%), Gaps = 11/68 (16%)
Frame = -3
Query: 588 FGVEVPIYYR--------PP---RDGEVEPVTGYARISHQVYNKVDDYYKFRDAVIQLVD 442
F VEVP+YY PP +DG +PVTGY RISHQVYN ++Y RDAV +LV
Sbjct: 402 FKVEVPLYYNSKAAAADAPPEMVKDGNGDPVTGYVRISHQVYNVREEYEALRDAVAKLVA 461
Query: 441 KGFTCALL 418
GFTC L
Sbjct: 462 DGFTCRKL 469
>dbj|BAA96579.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 482
Score = 61.6 bits (148), Expect = 7e-09
Identities = 35/65 (53%), Positives = 39/65 (59%), Gaps = 8/65 (12%)
Frame = -3
Query: 588 FGVEVPIYYRPPR--------DGEVEPVTGYARISHQVYNKVDDYYKFRDAVIQLVDKGF 433
F VEVPIYY R D + VTGY RISHQVYN +DY K RDAV +LV GF
Sbjct: 408 FMVEVPIYYNSRRVEAQEMAKDKNGDAVTGYVRISHQVYNVTEDYEKLRDAVNKLVADGF 467
Query: 432 TCALL 418
T + L
Sbjct: 468 TSSKL 472
>ref|NP_191772.1| putative protein; protein id: At3g62130.1, supported by cDNA:
27922., supported by cDNA: gi_17064881 [Arabidopsis
thaliana] gi|11358074|pir||T48005 hypothetical protein
T17J13.90 - Arabidopsis thaliana
gi|6899923|emb|CAB71873.1| putative protein [Arabidopsis
thaliana] gi|17064882|gb|AAL32595.1| putative protein
[Arabidopsis thaliana] gi|21555427|gb|AAM63856.1|
Similar to Streptomyces clavuligerus isopenicillin
epimerase (P18549) [Arabidopsis thaliana]
Length = 454
Score = 59.3 bits (142), Expect = 4e-08
Identities = 29/61 (47%), Positives = 37/61 (60%), Gaps = 7/61 (11%)
Frame = -3
Query: 588 FGVEVPIYYRPPRDGEVEP-------VTGYARISHQVYNKVDDYYKFRDAVIQLVDKGFT 430
+ VEVP++Y RDGE +T Y RISHQVYNK +DY + RDA+ +LV T
Sbjct: 388 YSVEVPVFYLGLRDGEEGVKDKDSGLITAYVRISHQVYNKTEDYERLRDAITELVKDQMT 447
Query: 429 C 427
C
Sbjct: 448 C 448
>ref|NP_681313.1| D-alanine:D-alanine ligase [Thermosynechococcus elongatus BP-1]
gi|22294244|dbj|BAC08075.1| D-alanine:D-alanine ligase
[Thermosynechococcus elongatus BP-1]
Length = 343
Score = 32.0 bits (71), Expect = 6.1
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -1
Query: 254 ELPWGQLQC*DLWNYPCKYNHNSDSL 177
++P+ LQ DLW+ PC+YNH D +
Sbjct: 137 QVPYVALQRSDLWSDPCRYNHLCDRI 162
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 500,142,549
Number of Sequences: 1393205
Number of extensions: 10142047
Number of successful extensions: 23479
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 22868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23469
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
