Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003004A_C02 KMC003004A_c02
(1141 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM93434.1| 40S ribosomal S4 protein [Glycine max] 517 e-145
ref|NP_565414.1| putative ribosomal protein S4; protein id: At2g... 496 e-139
ref|NP_568179.1| 40S ribosomal protein S4; protein id: At5g07090... 496 e-139
dbj|BAB11167.1| 40S ribosomal protein S4 [Arabidopsis thaliana] 494 e-138
ref|NP_200650.1| ribosomal protein S4 - like; protein id: At5g58... 493 e-138
>gb|AAM93434.1| 40S ribosomal S4 protein [Glycine max]
Length = 264
Score = 517 bits (1332), Expect = e-145
Identities = 252/264 (95%), Positives = 263/264 (99%)
Frame = -2
Query: 1098 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 919
MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
Query: 918 VIAILMQRHILVDGKVRTDKTYPSGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAK 739
VIAILMQRH+LVDGKVRTDKTYP+GFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAK
Sbjct: 61 VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAK 120
Query: 738 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPVIRANDTIKLDLQENKIVDFIKFDVGNV 559
FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDP+IRANDTIKLDL+ENKIVDFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIRANDTIKLDLEENKIVDFIKFDVGNV 180
Query: 558 VMVTGGRNRGRVGVIKSRDRQKGSFDTIHVQDATGHEFATRLGNVFTIGKGSKPWISLPK 379
VMVTGGRNRGRVGVIK+R++ KGSF+TIHVQD+TGHEFATR+GNVFTIGKG+KPWISLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDSTGHEFATRMGNVFTIGKGTKPWISLPK 240
Query: 378 GKGIKLSIIEEARKRIAAQQATAA 307
GKGIKLSIIEEARKRIAAQQATAA
Sbjct: 241 GKGIKLSIIEEARKRIAAQQATAA 264
>ref|NP_565414.1| putative ribosomal protein S4; protein id: At2g17360.1, supported by
cDNA: 10042., supported by cDNA: gi_13877536, supported
by cDNA: gi_14334915 [Arabidopsis thaliana]
gi|13877537|gb|AAK43846.1|AF370469_1 Unknown protein
[Arabidopsis thaliana] gi|14334916|gb|AAK59636.1|
putative ribosomal protein S4 [Arabidopsis thaliana]
gi|17104537|gb|AAL34157.1| putative ribosomal protein S4
[Arabidopsis thaliana] gi|17978689|gb|AAL47338.1| unknown
protein [Arabidopsis thaliana] gi|21536498|gb|AAM60830.1|
putative ribosomal protein S4 [Arabidopsis thaliana]
Length = 261
Score = 496 bits (1276), Expect = e-139
Identities = 234/261 (89%), Positives = 258/261 (98%)
Frame = -2
Query: 1098 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 919
MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Query: 918 VIAILMQRHILVDGKVRTDKTYPSGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAK 739
VI+ILMQRHI VDGKVRTDKTYP+GFMDVVSIPKTNENFRLLYDTKGRFRLHS++D+EAK
Sbjct: 61 VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120
Query: 738 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPVIRANDTIKLDLQENKIVDFIKFDVGNV 559
FKLCKVRS+QFGQKGIPYLNTYDGRTIRYPDP+I+ NDTIKLDL+ENKIV+FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180
Query: 558 VMVTGGRNRGRVGVIKSRDRQKGSFDTIHVQDATGHEFATRLGNVFTIGKGSKPWISLPK 379
VMVTGGRNRGRVGVIK+R++ KGSF+TIH+QD+TGHEFATRLGNV+TIGKG+KPW+SLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240
Query: 378 GKGIKLSIIEEARKRIAAQQA 316
GKGIKL+IIEEARKR++AQQA
Sbjct: 241 GKGIKLTIIEEARKRLSAQQA 261
>ref|NP_568179.1| 40S ribosomal protein S4; protein id: At5g07090.1, supported by cDNA:
13813., supported by cDNA: gi_15292998, supported by
cDNA: gi_17979542 [Arabidopsis thaliana]
gi|20143904|sp|P49204|RS4_ARATH 40S ribosomal protein S4
gi|11276521|pir||T48480 ribosomal protein S4 -
Arabidopsis thaliana gi|7546687|emb|CAB87265.1| ribosomal
protein S4 [Arabidopsis thaliana]
gi|15292999|gb|AAK93610.1| putative 40S ribosomal protein
S4 [Arabidopsis thaliana] gi|17979543|gb|AAL50106.1|
AT5g07090/T28J14_30 [Arabidopsis thaliana]
gi|19310835|gb|AAL85148.1| putative 40S ribosomal protein
S4 [Arabidopsis thaliana] gi|20147251|gb|AAM10339.1|
AT5g07090/T28J14_30 [Arabidopsis thaliana]
gi|21537414|gb|AAM61755.1| 40S ribosomal protein S4
[Arabidopsis thaliana]
Length = 262
Score = 496 bits (1276), Expect = e-139
Identities = 234/261 (89%), Positives = 258/261 (98%)
Frame = -2
Query: 1098 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 919
MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Query: 918 VIAILMQRHILVDGKVRTDKTYPSGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAK 739
VI+ILMQRHI VDGKVRTDKTYP+GFMDVVSIPKTNENFRLLYDTKGRFRLHS++D+EAK
Sbjct: 61 VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120
Query: 738 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPVIRANDTIKLDLQENKIVDFIKFDVGNV 559
FKLCKVRS+QFGQKGIPYLNTYDGRTIRYPDP+I+ NDTIKLDL+ENKIV+FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180
Query: 558 VMVTGGRNRGRVGVIKSRDRQKGSFDTIHVQDATGHEFATRLGNVFTIGKGSKPWISLPK 379
VMVTGGRNRGRVGVIK+R++ KGSF+TIH+QD+TGHEFATRLGNV+TIGKG+KPW+SLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240
Query: 378 GKGIKLSIIEEARKRIAAQQA 316
GKGIKL+IIEEARKR+A+QQA
Sbjct: 241 GKGIKLTIIEEARKRLASQQA 261
>dbj|BAB11167.1| 40S ribosomal protein S4 [Arabidopsis thaliana]
Length = 263
Score = 494 bits (1271), Expect = e-138
Identities = 233/260 (89%), Positives = 257/260 (98%)
Frame = -2
Query: 1095 ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 916
ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREV
Sbjct: 3 ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREV 62
Query: 915 IAILMQRHILVDGKVRTDKTYPSGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKF 736
I+ILMQRHI VDGKVRTDKTYP+GFMDVVSIPKTNENFRLLYDTKGRFRLHS++D+EAKF
Sbjct: 63 ISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKF 122
Query: 735 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPVIRANDTIKLDLQENKIVDFIKFDVGNVV 556
KLCKVRS+QFGQKGIPYLNTYDGRTIRYPDP+I+ NDTIKLDL+ENKIV+FIKFDVGNVV
Sbjct: 123 KLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVV 182
Query: 555 MVTGGRNRGRVGVIKSRDRQKGSFDTIHVQDATGHEFATRLGNVFTIGKGSKPWISLPKG 376
MVTGGRNRGRVGVIK+R++ KGSF+TIH+QD+TGHEFATRLGNV+TIGKG+KPW+SLPKG
Sbjct: 183 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKG 242
Query: 375 KGIKLSIIEEARKRIAAQQA 316
KGIKL+IIEEARKR+A+QQA
Sbjct: 243 KGIKLTIIEEARKRLASQQA 262
>ref|NP_200650.1| ribosomal protein S4 - like; protein id: At5g58420.1, supported by
cDNA: 22434., supported by cDNA: gi_16226258, supported
by cDNA: gi_17979232 [Arabidopsis thaliana]
gi|16226259|gb|AAL16117.1|AF428285_1 AT5g58420/mqj2_10
[Arabidopsis thaliana] gi|21592333|gb|AAM64284.1|
ribosomal protein S4-like [Arabidopsis thaliana]
Length = 262
Score = 493 bits (1270), Expect = e-138
Identities = 233/261 (89%), Positives = 257/261 (98%)
Frame = -2
Query: 1098 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 919
MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Query: 918 VIAILMQRHILVDGKVRTDKTYPSGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAK 739
VI+ILMQRHI VDGKVRTDKTYP+GFMDVVSIPKTNENFRLLYDTKGRFRLHS++D+EAK
Sbjct: 61 VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120
Query: 738 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPVIRANDTIKLDLQENKIVDFIKFDVGNV 559
FKLCKVRS+QFGQKGIPYLNTYDGRTIRYPDP+I+ NDTIKLDL+ NKIV+FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNV 180
Query: 558 VMVTGGRNRGRVGVIKSRDRQKGSFDTIHVQDATGHEFATRLGNVFTIGKGSKPWISLPK 379
VMVTGGRNRGRVGVIK+R++ KGSF+TIH+QD+TGHEFATRLGNV+TIGKG+KPW+SLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240
Query: 378 GKGIKLSIIEEARKRIAAQQA 316
GKGIKL+IIEEARKR+A+QQA
Sbjct: 241 GKGIKLTIIEEARKRLASQQA 261
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,008,497,030
Number of Sequences: 1393205
Number of extensions: 23252663
Number of successful extensions: 64782
Number of sequences better than 10.0: 153
Number of HSP's better than 10.0 without gapping: 61079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64644
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 69732809988
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
