Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003003A_C02 KMC003003A_c02
(677 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO63776.1| unknown [Populus tremuloides] 68 1e-10
ref|NP_194153.1| putative protein; protein id: At4g24220.1, supp... 65 1e-09
emb|CAC80137.1| progesterone 5-beta-reductase [Digitalis purpurea] 64 1e-09
dbj|BAC20032.1| putative induced upon wounding stress [Oryza sat... 58 1e-07
emb|CAA68126.1| induced upon wounding stress [Arabidopsis thaliana] 52 1e-05
>gb|AAO63776.1| unknown [Populus tremuloides]
Length = 391
Score = 68.2 bits (165), Expect = 1e-10
Identities = 40/106 (37%), Positives = 65/106 (60%), Gaps = 3/106 (2%)
Frame = -1
Query: 677 WRVLSEVFDV---GFVELDESDEFDLVELMRDKGAVWDEIVEKHGLEKTQLEEIACFEAI 507
W VL++ F + GFVE + S F E M+DKG VW+EIV+K+ L +LE++ +
Sbjct: 289 WTVLAQEFGIEKYGFVEGESSVTF--AEKMKDKGPVWEEIVKKNQLLSNKLEQVGGWW-F 345
Query: 506 MPVLRFGFQHVSSMSKSRECGFFGHADTFKSIRFWVGKLREMKLIP 369
++ G +V+SM+K++E GF G ++ KS W+ K+R K++P
Sbjct: 346 GDLIFSGSGYVASMNKAKEHGFLGFRNSKKSFVSWIHKMRAYKVVP 391
>ref|NP_194153.1| putative protein; protein id: At4g24220.1, supported by cDNA:
34176., supported by cDNA: gi_17064749 [Arabidopsis
thaliana] gi|7487331|pir||T09885 hypothetical protein
T22A6.50 - Arabidopsis thaliana
gi|5051764|emb|CAB45057.1| putative protein [Arabidopsis
thaliana] gi|7269272|emb|CAB79332.1| putative protein
[Arabidopsis thaliana] gi|17064750|gb|AAL32529.1|
putative protein [Arabidopsis thaliana]
gi|21592923|gb|AAM64873.1| induced upon wounding stress
[Arabidopsis thaliana]
Length = 388
Score = 64.7 bits (156), Expect = 1e-09
Identities = 33/104 (31%), Positives = 61/104 (57%), Gaps = 1/104 (0%)
Frame = -1
Query: 677 WRVLSEVFDVGFVELDESDEFDLVELMRDKGAVWDEIVEKHGLEKTQLEEIACFEAIMPV 498
W++L+E F + +E LVE+M+ K VW+E+V+++ L++ +LEE+ + +
Sbjct: 287 WKILAEQFGIEEYGFEEGKNLGLVEMMKGKERVWEEMVKENQLQEKKLEEVGVWWFADVI 346
Query: 497 LRFGFQ-HVSSMSKSRECGFFGHADTFKSIRFWVGKLREMKLIP 369
L G + + SM+KS+E GF G ++ S W+ K + K++P
Sbjct: 347 L--GVEGMIDSMNKSKEYGFLGFRNSNNSFISWIDKYKAFKIVP 388
>emb|CAC80137.1| progesterone 5-beta-reductase [Digitalis purpurea]
Length = 389
Score = 64.3 bits (155), Expect = 1e-09
Identities = 36/103 (34%), Positives = 59/103 (56%)
Frame = -1
Query: 677 WRVLSEVFDVGFVELDESDEFDLVELMRDKGAVWDEIVEKHGLEKTQLEEIACFEAIMPV 498
W+VL+E F V E E + L +LM+ K AVW+EIV ++GL T+L++I + V
Sbjct: 288 WKVLAEQFGVECGEYGEGVDLKLQDLMKGKEAVWEEIVRENGLTPTKLKDIGIW-WFGDV 346
Query: 497 LRFGFQHVSSMSKSRECGFFGHADTFKSIRFWVGKLREMKLIP 369
+ + SM+KS+E GF G ++ + W+ K + K++P
Sbjct: 347 ILGNECFLDSMNKSKEHGFLGFRNSKNAFISWIDKAKAYKIVP 389
>dbj|BAC20032.1| putative induced upon wounding stress [Oryza sativa (japonica
cultivar-group)]
Length = 410
Score = 58.2 bits (139), Expect = 1e-07
Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Frame = -1
Query: 677 WRVLSEVFDVGFVELD-ESDEFDLVELMRDKGAVWDEIVEKHGLEKTQLEEIACFEAIMP 501
W VL+ F V + + E L M K AVW EIV + L T+L E+A + +
Sbjct: 307 WPVLAGKFGVEWAGYEGEERRVGLTAAMAGKEAVWAEIVAEEKLVATELGEVANWWFVDA 366
Query: 500 VLRFGFQHVSSMSKSRECGFFGHADTFKSIRFWVGKLREMKLIP 369
+ ++ V +M+KS+E GF G +T +S W+ K++ +++P
Sbjct: 367 LFMDKWEFVDTMNKSKEHGFLGFRNTLRSFEAWIDKMKLYRIVP 410
>emb|CAA68126.1| induced upon wounding stress [Arabidopsis thaliana]
Length = 386
Score = 51.6 bits (122), Expect = 1e-05
Identities = 27/82 (32%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Frame = -1
Query: 611 LVELMRDKGAVWDEIVEKHGLEKTQLEEIACFEAIMPVLRFGFQ-HVSSMSKSRECGFFG 435
LVE+M+ K VW+E+V+++ L++ +LEE+ + +L G + + SM+K +E GF G
Sbjct: 307 LVEMMKGKERVWEEMVKENQLQEKKLEEVGVWWFADVIL--GVEGMIDSMNKRKEYGFLG 364
Query: 434 HADTFKSIRFWVGKLREMKLIP 369
++ S W+ K + K++P
Sbjct: 365 FRNSNNSFISWIDKYKAFKIVP 386
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 599,240,625
Number of Sequences: 1393205
Number of extensions: 13505577
Number of successful extensions: 45595
Number of sequences better than 10.0: 140
Number of HSP's better than 10.0 without gapping: 39495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44785
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29987172312
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
