Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003002A_C01 KMC003002A_c01
(522 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201045.1| KED - like protein; protein id: At5g62390.1, su... 42 0.003
ref|NP_248284.1| conserved hypothetical protein [Methanococcus j... 33 1.5
ref|NP_620051.1| polyprotein [Pestivirus Reindeer-1] gi|15282444... 28 9.1
gb|EAA00268.1| agCP9644 [Anopheles gambiae str. PEST] 31 9.9
ref|NP_032066.1| formyl peptide receptor, related sequence 3 [Mu... 31 9.9
>ref|NP_201045.1| KED - like protein; protein id: At5g62390.1, supported by cDNA:
gi_20260357 [Arabidopsis thaliana]
gi|8809652|dbj|BAA97203.1|
dbj|BAA90612.1~gene_id:MMI9.22~similar to unknown
protein [Arabidopsis thaliana]
gi|20260358|gb|AAM13077.1| unknown protein [Arabidopsis
thaliana] gi|22136176|gb|AAM91166.1| unknown protein
[Arabidopsis thaliana]
Length = 446
Score = 42.4 bits (98), Expect = 0.003
Identities = 25/43 (58%), Positives = 29/43 (67%)
Frame = -3
Query: 520 VDELEANA*MWWIPRLVGDHSPLRRRTFDMPDGVIRKEIEEGV 392
VDELEA + P+ G +RRRTFDMPD +IRKEI EGV
Sbjct: 393 VDELEAMLDVV-DPQPQGKSLSMRRRTFDMPDSLIRKEIAEGV 434
>ref|NP_248284.1| conserved hypothetical protein [Methanococcus jannaschii]
gi|3025058|sp|Q58682|YC86_METJA Hypothetical protein
MJ1286 gi|2128764|pir||E64460 hypothetical protein
MJ1286 - Methanococcus jannaschii
gi|1591923|gb|AAB99288.1| conserved hypothetical protein
[Methanococcus jannaschii]
Length = 595
Score = 33.5 bits (75), Expect = 1.5
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -1
Query: 243 FLNYAFMFHLMAFILLNYWHFLNEN 169
FL + +F ++ FIL +YWHF+ EN
Sbjct: 366 FLMFGILFLILPFILTSYWHFIIEN 390
>ref|NP_620051.1| polyprotein [Pestivirus Reindeer-1]
gi|15282444|gb|AAF02524.2|AF144618_1 polyprotein
[pestivirus reindeer-1 V60-Krefeld]
Length = 3895
Score = 28.5 bits (62), Expect(2) = 9.1
Identities = 17/47 (36%), Positives = 24/47 (50%)
Frame = +3
Query: 303 SGYI*LPPFILIGIAAILVLHQGTPHNRGATPSSISFRMTPSGMSNV 443
+GY + P LIG I LHQ A P+S++F + P G + V
Sbjct: 740 NGYFRIRPTCLIGSRFIASLHQ------RALPTSVTFELIPRGSAMV 780
Score = 20.8 bits (42), Expect(2) = 9.1
Identities = 10/34 (29%), Positives = 15/34 (43%)
Frame = +2
Query: 416 NDSIRHVKCPSSERRVIPHQAGDPPHSGIGFQLI 517
NDS CP + V+ + +G FQL+
Sbjct: 785 NDSFEFGLCPCDSKPVVKGKYNATLLNGSAFQLV 818
>gb|EAA00268.1| agCP9644 [Anopheles gambiae str. PEST]
Length = 507
Score = 30.8 bits (68), Expect = 9.9
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -1
Query: 261 VYVSLRFLNYAFMFHLMAFILLNYWHFLNENWALCLSCRFILNAM 127
VY LRFLN + HL A L WH + + + F++ M
Sbjct: 349 VYKRLRFLNNRMLSHLGALFFLAIWHGFHSGYYITFLLEFMVIRM 393
>ref|NP_032066.1| formyl peptide receptor, related sequence 3 [Mus musculus]
gi|3549282|gb|AAC34586.1| N-formylpeptide receptor-like
3 [Mus musculus]
Length = 343
Score = 30.8 bits (68), Expect = 9.9
Identities = 19/84 (22%), Positives = 39/84 (45%), Gaps = 4/84 (4%)
Frame = -1
Query: 300 FLAFHSAVVACC*VYVSLRFLNYAFM----FHLMAFILLNYWHFLNENWALCLSCRFILN 133
F H+ C Y++L +++FM H+++ ++ W F W LC +F+L+
Sbjct: 53 FRMAHTVTTIC---YLNLALGDFSFMVTLPLHIISMVMKGKWLF---GWFLC---KFVLS 103
Query: 132 AMHMHLILCSHLS*ICLFRHALCI 61
+H++L + L + C+
Sbjct: 104 IVHINLFVSVFLITLIAMDRCTCV 127
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 456,015,947
Number of Sequences: 1393205
Number of extensions: 9556199
Number of successful extensions: 20266
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 19711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20242
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
