Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003000A_C01 KMC003000A_c01
(782 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187151.1| unknown protein; protein id: At3g05000.1 [Arabi... 91 2e-17
dbj|BAC55719.1| P0656C04.4 [Oryza sativa (japonica cultivar-group)] 72 1e-11
ref|XP_216716.1| similar to RIKEN cDNA 5830498C14 [Mus musculus]... 52 1e-05
ref|XP_058630.5| similar to RIKEN cDNA 5830498C14 [Mus musculus]... 52 1e-05
ref|XP_127025.1| similar to RIKEN cDNA 5830498C14 [Mus musculus]... 52 1e-05
>ref|NP_187151.1| unknown protein; protein id: At3g05000.1 [Arabidopsis thaliana]
gi|12322850|gb|AAG51412.1|AC009465_12 unknown protein;
16248-17501 [Arabidopsis thaliana]
gi|27754554|gb|AAO22724.1| unknown protein [Arabidopsis
thaliana] gi|28394073|gb|AAO42444.1| unknown protein
[Arabidopsis thaliana]
Length = 173
Score = 90.9 bits (224), Expect = 2e-17
Identities = 44/61 (72%), Positives = 53/61 (86%)
Frame = -3
Query: 771 SSVEDNTSPTPESKAAQAMSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVCIK 592
+ +D ++P ESKAAQA+SM+LYFPCGIIRG LSNLGIPCAVSADIS+LP CSFV+ +K
Sbjct: 114 NETQDPSTPG-ESKAAQAVSMYLYFPCGIIRGVLSNLGIPCAVSADISSLPTCSFVIRVK 172
Query: 591 A 589
A
Sbjct: 173 A 173
>dbj|BAC55719.1| P0656C04.4 [Oryza sativa (japonica cultivar-group)]
Length = 185
Score = 71.6 bits (174), Expect = 1e-11
Identities = 34/49 (69%), Positives = 39/49 (79%)
Frame = -3
Query: 759 DNTSPTPESKAAQAMSMHLYFPCGIIRGALSNLGIPCAVSADISNLPAC 613
+N S T AAQ SM LYFPCGIIRGAL+NLGI C+V+AD+SNLPAC
Sbjct: 119 ENDSTTLGDSAAQTTSMLLYFPCGIIRGALTNLGISCSVTADMSNLPAC 167
>ref|XP_216716.1| similar to RIKEN cDNA 5830498C14 [Mus musculus] [Rattus norvegicus]
gi|27664540|ref|XP_216708.1| similar to RIKEN cDNA
5830498C14 [Mus musculus] [Rattus norvegicus]
Length = 158
Score = 51.6 bits (122), Expect = 1e-05
Identities = 23/41 (56%), Positives = 31/41 (75%)
Frame = -3
Query: 714 SMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVCIK 592
S +L F CG+IRG LSNLGI V+A++S++PAC F V I+
Sbjct: 116 SKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQ 156
>ref|XP_058630.5| similar to RIKEN cDNA 5830498C14 [Mus musculus] [Homo sapiens]
gi|28071132|emb|CAD61947.1| unnamed protein product
[Homo sapiens]
Length = 158
Score = 51.6 bits (122), Expect = 1e-05
Identities = 23/41 (56%), Positives = 31/41 (75%)
Frame = -3
Query: 714 SMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVCIK 592
S +L F CG+IRG LSNLGI V+A++S++PAC F V I+
Sbjct: 116 SKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQ 156
>ref|XP_127025.1| similar to RIKEN cDNA 5830498C14 [Mus musculus]
gi|12860483|dbj|BAB31972.1| unnamed protein product [Mus
musculus] gi|21618688|gb|AAH31464.1| RIKEN cDNA
5830498C14 gene [Mus musculus]
gi|26354226|dbj|BAC40741.1| unnamed protein product [Mus
musculus]
Length = 158
Score = 51.6 bits (122), Expect = 1e-05
Identities = 23/41 (56%), Positives = 31/41 (75%)
Frame = -3
Query: 714 SMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVCIK 592
S +L F CG+IRG LSNLGI V+A++S++PAC F V I+
Sbjct: 116 SKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQ 156
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 651,737,999
Number of Sequences: 1393205
Number of extensions: 14011726
Number of successful extensions: 25455
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 24691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25451
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38935490438
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
