Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002999A_C01 KMC002999A_c01
(495 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566961.1| expressed protein; protein id: At3g52190.1, sup... 50 2e-05
dbj|BAC42349.1| unknown protein [Arabidopsis thaliana] 50 2e-05
ref|XP_137478.2| similar to endogenous retroviral family W, env(... 32 5.0
>ref|NP_566961.1| expressed protein; protein id: At3g52190.1, supported by cDNA:
124263. [Arabidopsis thaliana] gi|11357774|pir||T49098
hypothetical protein F4F15.300 - Arabidopsis thaliana
gi|4678948|emb|CAB41339.1| putative protein [Arabidopsis
thaliana]
Length = 398
Score = 49.7 bits (117), Expect = 2e-05
Identities = 22/34 (64%), Positives = 27/34 (78%)
Frame = -2
Query: 485 LFIASAIVFYIFFENSDSFWNFPMGKNQPARPRL 384
LF+AS I Y+FFENSDSFW PMGK+Q RP++
Sbjct: 345 LFMASVIAAYVFFENSDSFWKLPMGKDQ-KRPKI 377
>dbj|BAC42349.1| unknown protein [Arabidopsis thaliana]
Length = 271
Score = 49.7 bits (117), Expect = 2e-05
Identities = 22/34 (64%), Positives = 27/34 (78%)
Frame = -2
Query: 485 LFIASAIVFYIFFENSDSFWNFPMGKNQPARPRL 384
LF+AS I Y+FFENSDSFW PMGK+Q RP++
Sbjct: 218 LFMASVIAAYVFFENSDSFWKLPMGKDQ-KRPKI 250
>ref|XP_137478.2| similar to endogenous retroviral family W, env(C7), member 1
(syncytin); envelope protein; syncytin [Homo sapiens]
[Mus musculus]
Length = 663
Score = 31.6 bits (70), Expect = 5.0
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +2
Query: 257 HLTASNPTALRTGSIMSMWSHLLIITIQCQFDHEKNGDWDLLSTL 391
HLT A RT +++ + HLL++ F HE N +++LS++
Sbjct: 105 HLTGP---ASRTSALLQNYCHLLVVAGLTDFQHESNRRYEVLSSM 146
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 398,293,758
Number of Sequences: 1393205
Number of extensions: 8131458
Number of successful extensions: 20936
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20936
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
