Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002998A_C03 KMC002998A_c03
(581 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB03071.1| gb|AAD15384.1~gene_id:MKA23.16~similar to unknow... 36 0.40
gb|AAL32880.1| Unknown protein [Arabidopsis thaliana] gi|2014857... 36 0.40
dbj|BAB01942.1| gb|AAD15386.1~gene_id:MMP21.2~similar to unknown... 36 0.40
dbj|BAC55666.1| OJ1092_A07.20 [Oryza sativa (japonica cultivar-g... 35 0.52
ref|NP_563734.1| expressed protein; protein id: At1g05340.1, sup... 35 0.68
>dbj|BAB03071.1| gb|AAD15384.1~gene_id:MKA23.16~similar to unknown protein
[Arabidopsis thaliana]
Length = 72
Score = 35.8 bits (81), Expect = 0.40
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = -2
Query: 343 CAAICCCCALDICF 302
CAAICCCC LD CF
Sbjct: 59 CAAICCCCVLDACF 72
>gb|AAL32880.1| Unknown protein [Arabidopsis thaliana] gi|20148575|gb|AAM10178.1|
unknown protein [Arabidopsis thaliana]
gi|26453276|dbj|BAC43711.1| unknown protein [Arabidopsis
thaliana]
Length = 71
Score = 35.8 bits (81), Expect = 0.40
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = -2
Query: 343 CAAICCCCALDICF 302
CAAICCCC LD CF
Sbjct: 58 CAAICCCCVLDACF 71
>dbj|BAB01942.1| gb|AAD15386.1~gene_id:MMP21.2~similar to unknown protein
[Arabidopsis thaliana] gi|21593174|gb|AAM65123.1|
unknown [Arabidopsis thaliana]
Length = 72
Score = 35.8 bits (81), Expect = 0.40
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = -2
Query: 343 CAAICCCCALDICF 302
CAAICCCC LD CF
Sbjct: 59 CAAICCCCVLDACF 72
>dbj|BAC55666.1| OJ1092_A07.20 [Oryza sativa (japonica cultivar-group)]
Length = 70
Score = 35.4 bits (80), Expect = 0.52
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = -2
Query: 343 CAAICCCCALDICF 302
CAA+CCCC LD+CF
Sbjct: 57 CAALCCCCLLDMCF 70
>ref|NP_563734.1| expressed protein; protein id: At1g05340.1, supported by cDNA:
20380., supported by cDNA: gi_13430463, supported by
cDNA: gi_15810660 [Arabidopsis thaliana]
gi|25406839|pir||C86188 hypothetical protein [imported]
- Arabidopsis thaliana gi|2388562|gb|AAB71443.1| EST
gb|ATTS0295 comes from this gene. [Arabidopsis
thaliana] gi|13430464|gb|AAK25854.1|AF360144_1 unknown
protein [Arabidopsis thaliana]
gi|15810661|gb|AAL07255.1| unknown protein [Arabidopsis
thaliana] gi|21554110|gb|AAM63190.1| unknown
[Arabidopsis thaliana]
Length = 72
Score = 35.0 bits (79), Expect = 0.68
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = -2
Query: 355 FSCSCAAICCCCALDICF 302
F AA+CCCCALDICF
Sbjct: 55 FKGCLAAMCCCCALDICF 72
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 432,911,647
Number of Sequences: 1393205
Number of extensions: 8499025
Number of successful extensions: 25542
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 23656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25320
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
