Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002996A_C01 KMC002996A_c01
(1233 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9SEC2|MSRA_LACSA Peptide methionine sulfoxide reductase (Pro... 271 1e-86
ref|NP_568937.1| peptide methionine sulfoxide reductase - like p... 262 1e-82
gb|AAM65092.1| protein-methionine-S-oxide reductase [Arabidopsis... 265 1e-81
ref|NP_194243.1| protein-methionine-S-oxide reductase; protein i... 264 3e-81
gb|AAM64607.1| peptide methionine sulfoxide reductase (msr) [Ara... 261 3e-81
>sp|Q9SEC2|MSRA_LACSA Peptide methionine sulfoxide reductase (Protein-methionine-S-oxide
reductase) (Peptide Met(O) reductase)
gi|6635341|gb|AAF19789.1|AF162204_1 methionine sulfoxide
reductase [Lactuca sativa]
Length = 259
Score = 271 bits (693), Expect(2) = 1e-86
Identities = 144/224 (64%), Positives = 174/224 (77%), Gaps = 8/224 (3%)
Frame = -3
Query: 1108 STTSSSF---LVYISSSLSCPSKTKFLPSLSK--FSVKRSCFFSETRPRLAGSKPSMNLL 944
+TT +S L+ ISS LS + F + +K F+++ S + P++ M+ L
Sbjct: 10 TTTPASLPLPLLSISSHLSLSKPSSFPVTSTKPLFTLRHS----SSTPKI------MSWL 59
Query: 943 NRLGFGSTRSPEN--MD-SSIAQGPDDDIPAPGQQFAQFGAGCFWGVELAFQRVPGVTKT 773
RLG G TR+P + MD SSIAQGPDDDIPAPGQQFAQFGAGCFWGVELAFQRVPGV+KT
Sbjct: 60 GRLGXG-TRTPADASMDQSSIAQGPDDDIPAPGQQFAQFGAGCFWGVELAFQRVPGVSKT 118
Query: 772 EVGYSQGILHNPSYEDVSSGTTNHAEIVRVQYDPKACGYESLLDVFWARHDPTTLNRQGN 593
EVGY+QG LHNP+Y D+ SGTTNH+E+VRVQYDPKAC ++SLLD FW RHDPTTLNRQGN
Sbjct: 119 EVGYTQGFLHNPTYNDICSGTTNHSEVVRVQYDPKACSFDSLLDCFWERHDPTTLNRQGN 178
Query: 592 DVGTHYRSGIYFYTPEPEKAAQESLEQHQKQLHRKIVSEIHPAQ 461
DVGT YRSGIYFYTPE EKAA E+ E+HQK+L+R +V+EI PA+
Sbjct: 179 DVGTQYRSGIYFYTPEQEKAAIEAKERHQKKLNRTVVTEILPAK 222
Score = 72.4 bits (176), Expect(2) = 1e-86
Identities = 30/32 (93%), Positives = 31/32 (96%)
Frame = -2
Query: 443 EEYHQQYLAKGGRFGFKQSTSKGCNDPIRCYG 348
EEYHQQYLAKGGRFGF+QST KGCNDPIRCYG
Sbjct: 228 EEYHQQYLAKGGRFGFRQSTEKGCNDPIRCYG 259
>ref|NP_568937.1| peptide methionine sulfoxide reductase - like protein; protein id:
At5g61640.1, supported by cDNA: 95135. [Arabidopsis
thaliana] gi|9758479|dbj|BAB09008.1| peptide methionine
sulfoxide reductase [Arabidopsis thaliana]
gi|29028812|gb|AAO64785.1| At5g61640 [Arabidopsis
thaliana]
Length = 202
Score = 262 bits (669), Expect(2) = 1e-82
Identities = 122/165 (73%), Positives = 141/165 (84%)
Frame = -3
Query: 955 MNLLNRLGFGSTRSPENMDSSIAQGPDDDIPAPGQQFAQFGAGCFWGVELAFQRVPGVTK 776
MN+LN+LG GS+R S IAQ DD+ PAPG QF QFGAGCFW VELA+QRVPGVT+
Sbjct: 1 MNILNKLGIGSSRQTNMDPSPIAQVIDDEAPAPGNQFTQFGAGCFWSVELAYQRVPGVTQ 60
Query: 775 TEVGYSQGILHNPSYEDVSSGTTNHAEIVRVQYDPKACGYESLLDVFWARHDPTTLNRQG 596
TEVGYSQGI H+PSY+DV SGTTNHAEIVRVQYDPK C Y+SLLD+FW++HDPTTLNRQG
Sbjct: 61 TEVGYSQGITHDPSYKDVCSGTTNHAEIVRVQYDPKECSYQSLLDLFWSKHDPTTLNRQG 120
Query: 595 NDVGTHYRSGIYFYTPEPEKAAQESLEQHQKQLHRKIVSEIHPAQ 461
NDVGT YRSGIYFY PE EK A+ESLE+HQ+Q+ RK+V+EI PA+
Sbjct: 121 NDVGTQYRSGIYFYNPEQEKLARESLERHQQQVDRKVVTEILPAK 165
Score = 68.2 bits (165), Expect(2) = 1e-82
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = -2
Query: 443 EEYHQQYLAKGGRFGFKQSTSKGCNDPIRCYG 348
EE+HQQYL+KGGRFG KQST KGCNDPIRCYG
Sbjct: 171 EEHHQQYLSKGGRFGLKQSTEKGCNDPIRCYG 202
>gb|AAM65092.1| protein-methionine-S-oxide reductase [Arabidopsis thaliana]
Length = 258
Score = 265 bits (678), Expect(2) = 1e-81
Identities = 135/208 (64%), Positives = 157/208 (74%), Gaps = 4/208 (1%)
Frame = -3
Query: 1075 SSSLSCPSKTKFLPSLSKFSVKRSCFFSET--RPRLAGSKPSMNLLNRLGFGSTRSPENM 902
++SLS P + +LS K C F +T RP P NL NRLGFGS +
Sbjct: 13 AASLSKPLNSLSKAALSFSRAKPICPFPQTSRRPISVYKSPMNNLFNRLGFGSRPQAQAD 72
Query: 901 DSS--IAQGPDDDIPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGILHNPSYE 728
SS IAQGPDDD+P+ GQQFAQFGAGCFWGVELA+QRVPGVTKTEVGYS GI+HNPSYE
Sbjct: 73 PSSAAIAQGPDDDVPSSGQQFAQFGAGCFWGVELAYQRVPGVTKTEVGYSHGIVHNPSYE 132
Query: 727 DVSSGTTNHAEIVRVQYDPKACGYESLLDVFWARHDPTTLNRQGNDVGTHYRSGIYFYTP 548
DV +GTT H E+VRVQYDPK C +ESLLDVFW RHDPTTLNRQG DVGT YRSGIY+YT
Sbjct: 133 DVCTGTTGHNEVVRVQYDPKECSFESLLDVFWNRHDPTTLNRQGGDVGTQYRSGIYYYTD 192
Query: 547 EPEKAAQESLEQHQKQLHRKIVSEIHPA 464
E E+ A+E++E+ QK L++KIV+EI PA
Sbjct: 193 EQERIAREAVEKQQKILNKKIVTEILPA 220
Score = 61.6 bits (148), Expect(2) = 1e-81
Identities = 25/32 (78%), Positives = 26/32 (81%)
Frame = -2
Query: 443 EEYHQQYLAKGGRFGFKQSTSKGCNDPIRCYG 348
E YHQQYLAKGGR G +QS KGC DPIRCYG
Sbjct: 227 ENYHQQYLAKGGRMGLRQSAEKGCKDPIRCYG 258
>ref|NP_194243.1| protein-methionine-S-oxide reductase; protein id: At4g25130.1,
supported by cDNA: 36536., supported by cDNA: gi_15146323
[Arabidopsis thaliana] gi|12644314|sp|P54150|MSRA_ARATH
Peptide methionine sulfoxide reductase
(Protein-methionine-S-oxide reductase) (Peptide Met(O)
reductase) gi|7446680|pir||T05534
protein-methionine-S-oxide reductase (EC 1.8.4.6) -
Arabidopsis thaliana gi|4455256|emb|CAB36755.1|
protein-methionine-S-oxide reductase [Arabidopsis
thaliana] gi|7269363|emb|CAB79422.1|
protein-methionine-S-oxide reductase [Arabidopsis
thaliana]
Length = 258
Score = 264 bits (675), Expect(2) = 3e-81
Identities = 134/208 (64%), Positives = 157/208 (75%), Gaps = 4/208 (1%)
Frame = -3
Query: 1075 SSSLSCPSKTKFLPSLSKFSVKRSCFFSET--RPRLAGSKPSMNLLNRLGFGSTRSPENM 902
++SLS P + +LS K C F +T RP P NL NRLGFGS +
Sbjct: 13 AASLSKPLNSLSKAALSFSRAKPICPFPQTSRRPISVYKSPMNNLFNRLGFGSRPQAQAD 72
Query: 901 DSS--IAQGPDDDIPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGILHNPSYE 728
SS IAQGPDDD+P+ GQQFAQFGAGCFWGVELA+QRVPGVTKTEVGYS GI+HNPSYE
Sbjct: 73 PSSAAIAQGPDDDVPSSGQQFAQFGAGCFWGVELAYQRVPGVTKTEVGYSHGIVHNPSYE 132
Query: 727 DVSSGTTNHAEIVRVQYDPKACGYESLLDVFWARHDPTTLNRQGNDVGTHYRSGIYFYTP 548
DV +GTT H E+VRVQYDPK C +ESLLDVFW RHDPTTLNRQG DVGT YRSGIY+YT
Sbjct: 133 DVCTGTTGHNEVVRVQYDPKECSFESLLDVFWNRHDPTTLNRQGGDVGTQYRSGIYYYTD 192
Query: 547 EPEKAAQESLEQHQKQLHRKIVSEIHPA 464
E E+ A+E++E+ QK L+++IV+EI PA
Sbjct: 193 EQERIAREAVEKQQKILNKRIVTEILPA 220
Score = 61.6 bits (148), Expect(2) = 3e-81
Identities = 25/32 (78%), Positives = 26/32 (81%)
Frame = -2
Query: 443 EEYHQQYLAKGGRFGFKQSTSKGCNDPIRCYG 348
E YHQQYLAKGGR G +QS KGC DPIRCYG
Sbjct: 227 ENYHQQYLAKGGRMGLRQSAEKGCKDPIRCYG 258
>gb|AAM64607.1| peptide methionine sulfoxide reductase (msr) [Arabidopsis thaliana]
Length = 202
Score = 261 bits (667), Expect(2) = 3e-81
Identities = 123/165 (74%), Positives = 139/165 (83%)
Frame = -3
Query: 955 MNLLNRLGFGSTRSPENMDSSIAQGPDDDIPAPGQQFAQFGAGCFWGVELAFQRVPGVTK 776
MN+LNRLG GS+ S IAQG DDD PAPG QFAQFGAGCFWGVELAFQRVPGVT+
Sbjct: 1 MNILNRLGLGSSGQTNMDPSPIAQGNDDDTPAPGNQFAQFGAGCFWGVELAFQRVPGVTQ 60
Query: 775 TEVGYSQGILHNPSYEDVSSGTTNHAEIVRVQYDPKACGYESLLDVFWARHDPTTLNRQG 596
TE GY+QG +HNPSY DV SGTT H+E+VRVQYD C YESLLD+FW+RHDPTTLNRQG
Sbjct: 61 TEAGYTQGTVHNPSYGDVCSGTTGHSEVVRVQYDLNDCTYESLLDLFWSRHDPTTLNRQG 120
Query: 595 NDVGTHYRSGIYFYTPEPEKAAQESLEQHQKQLHRKIVSEIHPAQ 461
NDVGT YRSGIYFYTPE EK A+ESLE+HQ+Q+ RKI++EI PA+
Sbjct: 121 NDVGTQYRSGIYFYTPEQEKLARESLERHQQQMERKIMTEILPAK 165
Score = 64.7 bits (156), Expect(2) = 3e-81
Identities = 27/32 (84%), Positives = 30/32 (93%)
Frame = -2
Query: 443 EEYHQQYLAKGGRFGFKQSTSKGCNDPIRCYG 348
EE+HQQYL+KGGRFG QST+KGCNDPIRCYG
Sbjct: 171 EEHHQQYLSKGGRFGQGQSTAKGCNDPIRCYG 202
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,089,810,742
Number of Sequences: 1393205
Number of extensions: 26532516
Number of successful extensions: 86671
Number of sequences better than 10.0: 271
Number of HSP's better than 10.0 without gapping: 78824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86197
length of database: 448,689,247
effective HSP length: 126
effective length of database: 273,145,417
effective search space used: 77573298428
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
