Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002992A_C02 KMC002992A_c02
(1048 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA36416.1| lectin-related polypeptide [Robinia pseudoacacia] 311 8e-84
sp|P19664|LEC_LOTTE ANTI-H(O) LECTIN (LTA) 302 5e-81
pir||S11056 lectin - winged pea 300 3e-80
sp|Q41160|LCB3_ROBPS PUTATIVE BARK AGGLUTININ LECRPA3 PRECURSOR 269 5e-71
gb|AAA80183.1| lectin 268 1e-70
>dbj|BAA36416.1| lectin-related polypeptide [Robinia pseudoacacia]
Length = 279
Score = 311 bits (798), Expect = 8e-84
Identities = 165/277 (59%), Positives = 201/277 (71%), Gaps = 9/277 (3%)
Frame = -2
Query: 1020 MATPYSNASTQN-----FLLACLFFLL---AINVNLAAAISFNFTEFTDDGSLIIQGDAK 865
MATPYSN STQ + FF+L A VN A ISF+FT+FT + +QG A+
Sbjct: 1 MATPYSNPSTQKPYSVPLAIFISFFVLLASARKVNSAEGISFDFTKFTQS-DITLQGSAQ 59
Query: 864 IWADGSLALPTDPSVGFTTSRALYATPVPIWDSTTGNVASFVTSFSFIIKDFEDYNPADG 685
I ++G LAL + ++ RALY P+PIWD++TGNVASFVTSFSF+++D NPADG
Sbjct: 60 ILSNGILALTKHVNPSWSEGRALYTEPIPIWDASTGNVASFVTSFSFVVQDIPGRNPADG 119
Query: 684 LVFFLAPFGTEIPKESTGGRFGIINGKDAFNQIVAVEFDTFINPWDSSPRHIGIDVNSLI 505
+VFFLAP TEIP S+GG+ GI++G +AFNQ V VEFD++IN WD+ HIGIDVNSLI
Sbjct: 120 IVFFLAPPDTEIPNNSSGGKLGIVDGNNAFNQFVGVEFDSYINDWDADSAHIGIDVNSLI 179
Query: 504 SLKTVPWNKVAGSLEKVTIIYDSQTKTLSVLVIHENGQISTISQEIDLKVVLPEEVSVGF 325
SLKTV WN+V+GSL V IIYDS TKTLSV V H NGQISTI+Q +DLK VLPE+V VGF
Sbjct: 180 SLKTVKWNRVSGSLVNVGIIYDSLTKTLSVAVTHANGQISTIAQVVDLKAVLPEKVRVGF 239
Query: 324 SATTTSGGRERHDIYSWSFTSTLNTN-GATGEHKNCK 217
SA TTSGG++ HDI+SWSFTS L T T E+ N K
Sbjct: 240 SAATTSGGQQIHDIHSWSFTSNLETTVSVTSENINIK 276
>sp|P19664|LEC_LOTTE ANTI-H(O) LECTIN (LTA)
Length = 240
Score = 302 bits (774), Expect = 5e-81
Identities = 156/234 (66%), Positives = 182/234 (77%), Gaps = 10/234 (4%)
Frame = -2
Query: 927 ISFNFTEFTDDGSLIIQGDAKIWADGSLALPTDPSVGF-----TTSRALYATPVPIWDST 763
+SFN+TEF DDGSLI+QGDAKIW DG LA+PTDP V + RALYATPVPIWDS
Sbjct: 1 VSFNYTEFKDDGSLILQGDAKIWTDGRLAMPTDPLVNNPKTTRSAGRALYATPVPIWDSA 60
Query: 762 TGNVASFVTSFSF--IIKDFEDYNPADGLVFFLAPFGTEIPKESTGGRFGIINGKDAFNQ 589
TGNVASFVTSF+F +I++ + Y P DGLVFFLAP GTEIP STGG GI +G + FNQ
Sbjct: 61 TGNVASFVTSFNFLFVIRELK-YTPTDGLVFFLAPVGTEIPSGSTGGFLGIFDGSNGFNQ 119
Query: 588 IVAVEFDTFINPWDSSP---RHIGIDVNSLISLKTVPWNKVAGSLEKVTIIYDSQTKTLS 418
VAVEFD++ N WD H+GIDVNS++SLK V WN+V+GSLEK TIIYDSQT LS
Sbjct: 120 FVAVEFDSYHNIWDPKSLRSSHVGIDVNSIMSLKAVNWNRVSGSLEKATIIYDSQTNILS 179
Query: 417 VLVIHENGQISTISQEIDLKVVLPEEVSVGFSATTTSGGRERHDIYSWSFTSTL 256
V++ +NGQI+TI IDLK VLPE+VSVGFSATT + RE+HDIYSWSFTSTL
Sbjct: 180 VVMTSQNGQITTIYGTIDLKTVLPEKVSVGFSATTGNPEREKHDIYSWSFTSTL 233
>pir||S11056 lectin - winged pea
Length = 240
Score = 300 bits (767), Expect = 3e-80
Identities = 155/234 (66%), Positives = 181/234 (77%), Gaps = 10/234 (4%)
Frame = -2
Query: 927 ISFNFTEFTDDGSLIIQGDAKIWADGSLALPTDPSVGF-----TTSRALYATPVPIWDST 763
+SF +TEF DDGSLI+QGDAKIW DG LA+PTDP V + RALYATPVPIWDS
Sbjct: 1 VSFXYTEFKDDGSLILQGDAKIWTDGRLAMPTDPLVNNPKTTRSAGRALYATPVPIWDSA 60
Query: 762 TGNVASFVTSFSF--IIKDFEDYNPADGLVFFLAPFGTEIPKESTGGRFGIINGKDAFNQ 589
TGNVASFVTSF+F +I++ + Y P DGLVFFLAP GTEIP STGG GI +G + FNQ
Sbjct: 61 TGNVASFVTSFNFLFVIRELK-YTPTDGLVFFLAPVGTEIPSGSTGGFLGIFDGSNGFNQ 119
Query: 588 IVAVEFDTFINPWDSSP---RHIGIDVNSLISLKTVPWNKVAGSLEKVTIIYDSQTKTLS 418
VAVEFD++ N WD H+GIDVNS++SLK V WN+V+GSLEK TIIYDSQT LS
Sbjct: 120 FVAVEFDSYHNIWDPKSLRSSHVGIDVNSIMSLKAVNWNRVSGSLEKATIIYDSQTNILS 179
Query: 417 VLVIHENGQISTISQEIDLKVVLPEEVSVGFSATTTSGGRERHDIYSWSFTSTL 256
V++ +NGQI+TI IDLK VLPE+VSVGFSATT + RE+HDIYSWSFTSTL
Sbjct: 180 VVMTSQNGQITTIYGTIDLKTVLPEKVSVGFSATTGNPEREKHDIYSWSFTSTL 233
>sp|Q41160|LCB3_ROBPS PUTATIVE BARK AGGLUTININ LECRPA3 PRECURSOR
Length = 272
Score = 269 bits (688), Expect = 5e-71
Identities = 151/267 (56%), Positives = 186/267 (69%), Gaps = 7/267 (2%)
Frame = -2
Query: 1002 NASTQNFLLACL--FFLLAINV---NLAAAISFNFTEFT-DDGSLIIQGDAKIWADGSLA 841
N T LLA L FF+L + N ISFNFT FT D + + G A I A+G LA
Sbjct: 3 NPETVYALLAMLISFFVLLASARKENSDEGISFNFTNFTRGDQGVTLLGQANIMANGILA 62
Query: 840 LPTDPSVGFTTSRALYATPVPIWDSTTGNVASFVTSFSFIIKDFEDYNPADGLVFFLAPF 661
L + + T RALY+ PVPIWDS TGNVASFVTSFSF++++ + PADG+VFFLAP
Sbjct: 63 LTNHTNPTWNTGRALYSKPVPIWDSATGNVASFVTSFSFVVQEIKGAIPADGIVFFLAP- 121
Query: 660 GTEIPKESTGGRFGIINGKDAFNQIVAVEFDTFINPWDSSPRHIGIDVNSLISLKTVPWN 481
IP S GG+ GI+N A+N V VEFDT+ N WD HIGID +SLISL+TV WN
Sbjct: 122 EARIPDNSAGGQLGIVNANKAYNPFVGVEFDTYSNNWDPKSAHIGIDASSLISLRTVKWN 181
Query: 480 KVAGSLEKVTIIYDSQTKTLSVLVIHENGQISTISQEIDLKVVLPEEVSVGFSATTTSGG 301
KV+GSL KV+IIYDS +KTLSV+V HENGQISTI+Q +DLK VL E+V VGF+A TT+ G
Sbjct: 182 KVSGSLVKVSIIYDSLSKTLSVVVTHENGQISTIAQVVDLKAVLGEKVRVGFTAATTT-G 240
Query: 300 RERHDIYSWSFTSTLNT-NGATGEHKN 223
RE +DI++WSFTSTL T +T ++ N
Sbjct: 241 RELYDIHAWSFTSTLVTATSSTSKNMN 267
>gb|AAA80183.1| lectin
Length = 260
Score = 268 bits (684), Expect = 1e-70
Identities = 147/257 (57%), Positives = 181/257 (70%), Gaps = 4/257 (1%)
Frame = -2
Query: 981 LLACLFFLLAI--NVNLAAAISFNFTEFT-DDGSLIIQGDAKIWADGSLALPTDPSVGFT 811
+L F LLA N ISFNFT FT D + + G A I A+G LAL + +
Sbjct: 1 MLISFFVLLASARKENSDEGISFNFTNFTRGDQGVTLLGQANIMANGILALTNHTNPTWN 60
Query: 810 TSRALYATPVPIWDSTTGNVASFVTSFSFIIKDFEDYNPADGLVFFLAPFGTEIPKESTG 631
T RALY+ PVPIWDS TGNVASFVTSFSF++++ + PADG+VFFLAP IP S G
Sbjct: 61 TGRALYSKPVPIWDSATGNVASFVTSFSFVVQEIKGAIPADGIVFFLAP-EARIPDNSAG 119
Query: 630 GRFGIINGKDAFNQIVAVEFDTFINPWDSSPRHIGIDVNSLISLKTVPWNKVAGSLEKVT 451
G+ GI+N A+N V VEFDT+ N WD HIGID +SLISL+TV WNKV+GSL KV+
Sbjct: 120 GQLGIVNANKAYNPFVGVEFDTYSNNWDPKSAHIGIDASSLISLRTVKWNKVSGSLVKVS 179
Query: 450 IIYDSQTKTLSVLVIHENGQISTISQEIDLKVVLPEEVSVGFSATTTSGGRERHDIYSWS 271
IIYDS +KTLSV+V HENGQISTI+Q +DLK VL E+V VGF+A TT+ GRE +DI++WS
Sbjct: 180 IIYDSLSKTLSVVVTHENGQISTIAQVVDLKAVLGEKVRVGFTAATTT-GRELYDIHAWS 238
Query: 270 FTSTLNT-NGATGEHKN 223
FTSTL T +T ++ N
Sbjct: 239 FTSTLVTATSSTSKNMN 255
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 904,452,201
Number of Sequences: 1393205
Number of extensions: 20203162
Number of successful extensions: 53050
Number of sequences better than 10.0: 377
Number of HSP's better than 10.0 without gapping: 49808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52142
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 61808729248
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
