Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002991A_C01 KMC002991A_c01
(574 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187583.2| DEAD/DEAH box RNA helicase protein, putative; p... 114 7e-25
gb|AAF23311.1|AC016661_36 putative RNA helicase [Arabidopsis tha... 114 7e-25
dbj|BAC07000.1| putative ATP-dependent RNA helicase [Oryza sativ... 95 5e-19
ref|NP_593033.1| atp-dependent rna helicase [Schizosaccharomyces... 70 2e-11
ref|NP_689513.1| ATP-dependent RNA helicase ROK1 [Homo sapiens] ... 63 3e-09
>ref|NP_187583.2| DEAD/DEAH box RNA helicase protein, putative; protein id:
At3g09720.1 [Arabidopsis thaliana]
gi|29028778|gb|AAO64768.1| At3g09720 [Arabidopsis
thaliana]
Length = 541
Score = 114 bits (286), Expect = 7e-25
Identities = 51/64 (79%), Positives = 59/64 (91%)
Frame = -2
Query: 573 GRSGRAGRSGEAITFYTEEDILFLRNVSNLMASSGCEVPSWLMELQKKKWRRHRPKRDSI 394
GRSGRAGRSGEAITFYTE+D+ FLRN++N M SSGCEVPSW+M L+KKKWR+HRP+RDSI
Sbjct: 469 GRSGRAGRSGEAITFYTEQDVPFLRNIANTMMSSGCEVPSWIMSLKKKKWRKHRPRRDSI 528
Query: 393 ST*P 382
ST P
Sbjct: 529 STKP 532
>gb|AAF23311.1|AC016661_36 putative RNA helicase [Arabidopsis thaliana]
Length = 545
Score = 114 bits (286), Expect = 7e-25
Identities = 51/64 (79%), Positives = 59/64 (91%)
Frame = -2
Query: 573 GRSGRAGRSGEAITFYTEEDILFLRNVSNLMASSGCEVPSWLMELQKKKWRRHRPKRDSI 394
GRSGRAGRSGEAITFYTE+D+ FLRN++N M SSGCEVPSW+M L+KKKWR+HRP+RDSI
Sbjct: 473 GRSGRAGRSGEAITFYTEQDVPFLRNIANTMMSSGCEVPSWIMSLKKKKWRKHRPRRDSI 532
Query: 393 ST*P 382
ST P
Sbjct: 533 STKP 536
>dbj|BAC07000.1| putative ATP-dependent RNA helicase [Oryza sativa (japonica
cultivar-group)] gi|23495827|dbj|BAC20037.1| putative
ATP-dependent RNA helicase [Oryza sativa (japonica
cultivar-group)]
Length = 540
Score = 95.1 bits (235), Expect = 5e-19
Identities = 45/65 (69%), Positives = 53/65 (81%)
Frame = -2
Query: 573 GRSGRAGRSGEAITFYTEEDILFLRNVSNLMASSGCEVPSWLMELQKKKWRRHRPKRDSI 394
GRSGRAGRSGEAITF+TEED FLRN++N++ SSGCEVPSW+ L K K ++HR RD I
Sbjct: 474 GRSGRAGRSGEAITFFTEEDKPFLRNIANVLISSGCEVPSWIKALPKLKRKKHRVNRDPI 533
Query: 393 ST*PD 379
ST PD
Sbjct: 534 STLPD 538
>ref|NP_593033.1| atp-dependent rna helicase [Schizosaccharomyces pombe]
gi|1175447|sp|Q09775|YA88_SCHPO Putative ATP-dependent
RNA helicase C22F3.08c gi|2130317|pir||S62423
ATP-dependent RNA helicase - fission yeast
(Schizosaccharomyces pombe) gi|1008436|emb|CAA91073.1|
atp-dependent rna helicase [Schizosaccharomyces pombe]
Length = 481
Score = 69.7 bits (169), Expect = 2e-11
Identities = 36/84 (42%), Positives = 53/84 (62%), Gaps = 6/84 (7%)
Frame = -2
Query: 573 GRSGRAGRSGEAITFYTEEDILFLRNVSNLMASSGCEVPSWLMEL------QKKKWRRHR 412
GR+GRAG +G+A+TF+T+ED +++ ++ +M SSGCEVP+W+M L KKK ++
Sbjct: 377 GRTGRAGNTGQAVTFFTKEDGEYIKLIAGVMRSSGCEVPNWVMALPKPSKEMKKKLKKSP 436
Query: 411 PKRDSIST*PDI*AYDPSRKWEQI 340
PKR I+T RK E I
Sbjct: 437 PKRKRITTRASYDRQKEQRKKEYI 460
>ref|NP_689513.1| ATP-dependent RNA helicase ROK1 [Homo sapiens]
gi|7023040|dbj|BAA91812.1| unnamed protein product [Homo
sapiens]
Length = 491
Score = 62.8 bits (151), Expect = 3e-09
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 6/70 (8%)
Frame = -2
Query: 573 GRSGRAGRSGEAITFYTEEDILFLRNVSNLMASSGCEVPSW------LMELQKKKWRRHR 412
GR+GRAG G+AITF+TE+D LR+V+N++ +GC VP + L+ QKKK +
Sbjct: 393 GRTGRAGNKGKAITFFTEDDKPLLRSVANVIQQAGCPVPEYIKGFQKLLSKQKKKMIKKP 452
Query: 411 PKRDSIST*P 382
+R+SIST P
Sbjct: 453 LERESISTTP 462
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 520,815,081
Number of Sequences: 1393205
Number of extensions: 11257754
Number of successful extensions: 21847
Number of sequences better than 10.0: 356
Number of HSP's better than 10.0 without gapping: 21163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21823
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
