Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002987A_C01 KMC002987A_c01
(488 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN05567.1| putative far-red impaired response protein [Oryza... 154 5e-37
gb|AAL86472.1|AC077693_11 putative transposase [Oryza sativa (ja... 151 3e-36
dbj|BAB84393.1| P0529E05.9 [Oryza sativa (japonica cultivar-group)] 142 2e-33
gb|AAM19033.1|AC084748_23 putative transposase [Oryza sativa (ja... 130 6e-30
dbj|BAC16510.1| transposase-like [Oryza sativa (japonica cultiva... 129 2e-29
>gb|AAN05567.1| putative far-red impaired response protein [Oryza sativa (japonica
cultivar-group)]
Length = 535
Score = 154 bits (389), Expect = 5e-37
Identities = 67/115 (58%), Positives = 90/115 (78%)
Frame = -1
Query: 473 RRQRSLLHGEAGYILQYFQRKLVENSPFYHAYQLDDEDQITNVFWVDARMLIDYGYFGDM 294
+RQR +++G+AG +L +FQ K+ EN F +A Q+D E+QI N+FWVDA+ML DY YFGD+
Sbjct: 89 KRQREMVYGQAGSMLMHFQDKIAENPSFQYALQMDSEEQIANIFWVDAKMLTDYAYFGDV 148
Query: 293 VSLDSTYCTNSSNRPLAVFSGFNHHRKAVIFGAALLYDETTESYKWLFESFLEAH 129
VS D+T+ TN +RP VF GFN R+ ++FGA LLYDET ES+KWLFE+FL+AH
Sbjct: 149 VSFDTTFGTNKESRPFGVFVGFNQFRETMVFGAVLLYDETYESFKWLFETFLKAH 203
>gb|AAL86472.1|AC077693_11 putative transposase [Oryza sativa (japonica cultivar-group)]
Length = 486
Score = 151 bits (382), Expect = 3e-36
Identities = 66/115 (57%), Positives = 88/115 (76%)
Frame = -1
Query: 473 RRQRSLLHGEAGYILQYFQRKLVENSPFYHAYQLDDEDQITNVFWVDARMLIDYGYFGDM 294
+RQR + +G+AG +L YFQ K+ EN F +A Q+D E+QI N+FWVDA+ML DY YFGD+
Sbjct: 221 KRQREMAYGQAGSMLMYFQDKIAENPSFQYALQMDQEEQIANIFWVDAKMLTDYAYFGDV 280
Query: 293 VSLDSTYCTNSSNRPLAVFSGFNHHRKAVIFGAALLYDETTESYKWLFESFLEAH 129
VS D+T+ TN +R VF GFN R+ ++FGA L+YDET ES+KWLFE+FL+AH
Sbjct: 281 VSFDTTFGTNKESRLFGVFVGFNQFRETIVFGAVLMYDETYESFKWLFETFLKAH 335
>dbj|BAB84393.1| P0529E05.9 [Oryza sativa (japonica cultivar-group)]
Length = 773
Score = 142 bits (358), Expect = 2e-33
Identities = 59/114 (51%), Positives = 87/114 (75%)
Frame = -1
Query: 473 RRQRSLLHGEAGYILQYFQRKLVENSPFYHAYQLDDEDQITNVFWVDARMLIDYGYFGDM 294
+R +S+ G+ G ILQY Q K +EN F++A Q+D+++ +TN+FW DAR ++D+ YFGD+
Sbjct: 314 KRMKSIQEGDTGAILQYLQDKQMENPSFFYAIQVDEDEMMTNIFWADARSVLDFDYFGDV 373
Query: 293 VSLDSTYCTNSSNRPLAVFSGFNHHRKAVIFGAALLYDETTESYKWLFESFLEA 132
+ D+TY TN+ RP A+F G NHH++ V+FGAALLYDETT +++WLFE+F A
Sbjct: 374 ICFDTTYRTNNYGRPFALFVGVNHHKQTVVFGAALLYDETTSTFEWLFETFKRA 427
>gb|AAM19033.1|AC084748_23 putative transposase [Oryza sativa (japonica cultivar-group)]
Length = 1203
Score = 130 bits (328), Expect = 6e-30
Identities = 56/114 (49%), Positives = 83/114 (72%)
Frame = -1
Query: 473 RRQRSLLHGEAGYILQYFQRKLVENSPFYHAYQLDDEDQITNVFWVDARMLIDYGYFGDM 294
R + + G+ I +Y QRK E+ F++A Q+D++DQ+TNVFW D + ++DY YFGD+
Sbjct: 555 RHTKDMQLGDTQAIYEYLQRKKGEHPSFFYAIQVDEDDQLTNVFWADVKSILDYHYFGDV 614
Query: 293 VSLDSTYCTNSSNRPLAVFSGFNHHRKAVIFGAALLYDETTESYKWLFESFLEA 132
+ +D+ Y T+ +RPL +F G NHH++ VIFGAAL+YDE+ ES+KWLFE+F A
Sbjct: 615 LCVDTRYSTSDHSRPLLLFIGVNHHKQPVIFGAALVYDESVESFKWLFETFKSA 668
>dbj|BAC16510.1| transposase-like [Oryza sativa (japonica cultivar-group)]
gi|24060024|dbj|BAC21481.1| transposase-like [Oryza
sativa (japonica cultivar-group)]
Length = 704
Score = 129 bits (323), Expect = 2e-29
Identities = 53/111 (47%), Positives = 81/111 (72%)
Frame = -1
Query: 473 RRQRSLLHGEAGYILQYFQRKLVENSPFYHAYQLDDEDQITNVFWVDARMLIDYGYFGDM 294
+R +++ G+ G IL+Y Q +EN F++ Q+D++D++TN FW D + D+ YFGD+
Sbjct: 258 KRMKAMQLGDGGAILKYLQTMQMENPAFFYTMQIDEDDKLTNFFWADPKSREDFNYFGDV 317
Query: 293 VSLDSTYCTNSSNRPLAVFSGFNHHRKAVIFGAALLYDETTESYKWLFESF 141
+ LD+TY N RPL++F G NHH++ ++FGAA+LYDE+ ESY+WLFESF
Sbjct: 318 LCLDTTYKINGYGRPLSLFLGVNHHKQTIVFGAAMLYDESFESYRWLFESF 368
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 373,916,468
Number of Sequences: 1393205
Number of extensions: 7150162
Number of successful extensions: 15500
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 15082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15488
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 14271597018
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
