Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002985A_C01 KMC002985A_c01
(554 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC55742.1| P0456B03.4 [Oryza sativa (japonica cultivar-group)] 113 1e-24
ref|NP_564985.1| expressed protein; protein id: At1g70160.1, sup... 111 7e-24
pir||D96724 hypothetical protein F20P5.12 [imported] - Arabidops... 111 7e-24
ref|NP_200298.1| putative protein; protein id: At5g54870.1, supp... 106 2e-22
ref|NP_194432.1| putative protein; protein id: At4g27020.1, supp... 103 1e-21
>dbj|BAC55742.1| P0456B03.4 [Oryza sativa (japonica cultivar-group)]
Length = 542
Score = 113 bits (283), Expect = 1e-24
Identities = 49/61 (80%), Positives = 53/61 (86%)
Frame = -2
Query: 553 FEDNQTRLPSWCNNENDRLPFCQILGEYRMELPGYNTLEPYAHMNEYCPSLPPTYDRPSR 374
FEDNQTRLPSWCN+ DRLPFCQILGEY+MELP YNT+EPYA+MNE CPS PPTY RP
Sbjct: 482 FEDNQTRLPSWCNSGADRLPFCQILGEYKMELPEYNTIEPYANMNENCPSSPPTYTRPLG 541
Query: 373 C 371
C
Sbjct: 542 C 542
>ref|NP_564985.1| expressed protein; protein id: At1g70160.1, supported by cDNA:
gi_13430575, supported by cDNA: gi_15293160 [Arabidopsis
thaliana] gi|13430576|gb|AAK25910.1|AF360200_1 unknown
protein [Arabidopsis thaliana]
gi|15293161|gb|AAK93691.1| unknown protein [Arabidopsis
thaliana]
Length = 523
Score = 111 bits (277), Expect = 7e-24
Identities = 46/61 (75%), Positives = 52/61 (84%)
Frame = -2
Query: 553 FEDNQTRLPSWCNNENDRLPFCQILGEYRMELPGYNTLEPYAHMNEYCPSLPPTYDRPSR 374
FE NQTRLPSWCN E +L FCQILGEYRMELPGYNT+ PY +MN+ CPSLPP Y+RPS+
Sbjct: 463 FESNQTRLPSWCNTEEGKLDFCQILGEYRMELPGYNTIYPYPNMNQNCPSLPPNYERPSK 522
Query: 373 C 371
C
Sbjct: 523 C 523
>pir||D96724 hypothetical protein F20P5.12 [imported] - Arabidopsis thaliana
gi|2194125|gb|AAB61100.1| ESTs gb|R30459,gb|N38441 come
from this gene. [Arabidopsis thaliana]
Length = 551
Score = 111 bits (277), Expect = 7e-24
Identities = 46/61 (75%), Positives = 52/61 (84%)
Frame = -2
Query: 553 FEDNQTRLPSWCNNENDRLPFCQILGEYRMELPGYNTLEPYAHMNEYCPSLPPTYDRPSR 374
FE NQTRLPSWCN E +L FCQILGEYRMELPGYNT+ PY +MN+ CPSLPP Y+RPS+
Sbjct: 491 FESNQTRLPSWCNTEEGKLDFCQILGEYRMELPGYNTIYPYPNMNQNCPSLPPNYERPSK 550
Query: 373 C 371
C
Sbjct: 551 C 551
>ref|NP_200298.1| putative protein; protein id: At5g54870.1, supported by cDNA:
gi_14596222 [Arabidopsis thaliana]
gi|9758267|dbj|BAB08766.1|
gene_id:MBG8.14~pir||T04825~strong similarity to unknown
protein [Arabidopsis thaliana]
Length = 531
Score = 106 bits (265), Expect = 2e-22
Identities = 43/62 (69%), Positives = 55/62 (88%), Gaps = 1/62 (1%)
Frame = -2
Query: 553 FEDNQTRLPSWCN-NENDRLPFCQILGEYRMELPGYNTLEPYAHMNEYCPSLPPTYDRPS 377
FE+N +RLP+WCN N++ +LP+CQILG+YRMELPGYNT+EPY+HMNE CP+LPP Y+RP
Sbjct: 470 FENNASRLPTWCNDNDSVKLPYCQILGKYRMELPGYNTMEPYSHMNEQCPTLPPKYNRPD 529
Query: 376 RC 371
C
Sbjct: 530 NC 531
>ref|NP_194432.1| putative protein; protein id: At4g27020.1, supported by cDNA:
gi_15982906, supported by cDNA: gi_18650638 [Arabidopsis
thaliana] gi|7452424|pir||T04825 hypothetical protein
F10M23.360 - Arabidopsis thaliana
gi|4455225|emb|CAB36548.1| putative protein [Arabidopsis
thaliana] gi|7269555|emb|CAB79557.1| putative protein
[Arabidopsis thaliana] gi|18650639|gb|AAL75889.1|
AT4g27020/F10M23_360 [Arabidopsis thaliana]
gi|23505979|gb|AAN28849.1| At4g27020/F10M23_360
[Arabidopsis thaliana]
Length = 523
Score = 103 bits (257), Expect = 1e-21
Identities = 43/62 (69%), Positives = 50/62 (80%), Gaps = 1/62 (1%)
Frame = -2
Query: 553 FEDNQTRLPSWCN-NENDRLPFCQILGEYRMELPGYNTLEPYAHMNEYCPSLPPTYDRPS 377
FE N +R P WCN N+ +LP+CQILG+YRMELPGYNT+EPY HMNE+CPSLPP Y RP
Sbjct: 462 FESNASRFPKWCNDNDVVKLPYCQILGKYRMELPGYNTMEPYPHMNEHCPSLPPKYHRPK 521
Query: 376 RC 371
C
Sbjct: 522 NC 523
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 486,480,935
Number of Sequences: 1393205
Number of extensions: 10536547
Number of successful extensions: 20626
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 20140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20615
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
