Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002984A_C01 KMC002984A_c01
(1073 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL50982.1|AF453323_1 zinc finger protein LSD2 [Brassica oler... 253 2e-66
gb|AAL50981.1|AF453322_1 zinc finger protein LSD1 [Brassica oler... 253 3e-66
ref|NP_567599.2| zinc-finger protein Lsd1; protein id: At4g20380... 251 5e-66
ref|NP_680728.1| zinc-finger protein Lsd1; protein id: At4g20380... 251 5e-66
ref|NP_564405.1| zinc-finger protein, putative; protein id: At1g... 188 1e-46
>gb|AAL50982.1|AF453323_1 zinc finger protein LSD2 [Brassica oleracea]
Length = 193
Score = 253 bits (645), Expect(2) = 2e-66
Identities = 127/182 (69%), Positives = 144/182 (78%), Gaps = 16/182 (8%)
Frame = -3
Query: 840 MQSQLVCNGCRSILLYPRGATNVCCALCNTITAVP------PP-----GMDMSQLYCGGC 694
MQ QL+C+GCR+ LLYPRGATNV CALCNTI VP PP GMDM+ + CGGC
Sbjct: 1 MQDQLMCHGCRNTLLYPRGATNVRCALCNTINMVPLHPPPPPPHHAHAGMDMAHIVCGGC 60
Query: 693 RTLLMYTRGAASVRCSCCHTVNLAPAA---NQVAHVPCGNCRTTLMYPYGAPSVKCALCH 523
RT+LMYTRGA+SVRCSCC TVNL PA NQ AHV CGNCRTTLMYPYGAPSV+CA+C
Sbjct: 61 RTMLMYTRGASSVRCSCCQTVNLVPATPPTNQPAHVNCGNCRTTLMYPYGAPSVRCAVCQ 120
Query: 522 YITNVNMSNGRLQVPMHRPNGTTNS-GALPSTST-SMPQSQTQTVVVENPMSVDSSGKLV 349
++TNVNM NGR+ P ++PNGT +S G +PSTST S P SQTQTVVVENPMSV+ SGKLV
Sbjct: 121 FVTNVNMGNGRVPFPTNQPNGTASSPGPMPSTSTQSTPPSQTQTVVVENPMSVNESGKLV 180
Query: 348 SN 343
SN
Sbjct: 181 SN 182
Score = 38.1 bits (87), Expect = 0.24
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = -3
Query: 870 SLRLVPGD--TAMQSQLVCNGCRSILLYPRGATNVCCALCNTITAV 739
++ LVP T + + C CR+ L+YP GA +V CA+C +T V
Sbjct: 80 TVNLVPATPPTNQPAHVNCGNCRTTLMYPYGAPSVRCAVCQFVTNV 125
Score = 23.5 bits (49), Expect(2) = 2e-66
Identities = 10/16 (62%), Positives = 13/16 (80%)
Frame = -1
Query: 359 GNWLAMLVVGVTTDKK 312
G ++ +VVGVTTDKK
Sbjct: 177 GKLVSNVVVGVTTDKK 192
>gb|AAL50981.1|AF453322_1 zinc finger protein LSD1 [Brassica oleracea]
Length = 193
Score = 253 bits (647), Expect = 3e-66
Identities = 123/183 (67%), Positives = 142/183 (77%), Gaps = 17/183 (9%)
Frame = -3
Query: 840 MQSQLVCNGCRSILLYPRGATNVCCALCNTITAVP---------PP-----GMDMSQLYC 703
MQ QLVC+GCR+ L+YPRGATNV CALC+ + VP PP GMDM+ + C
Sbjct: 1 MQDQLVCHGCRNTLMYPRGATNVRCALCHIVNMVPLHPHPPPPPPPHHAHAGMDMAHIVC 60
Query: 702 GGCRTLLMYTRGAASVRCSCCHTVNLAPA---ANQVAHVPCGNCRTTLMYPYGAPSVKCA 532
GGCRT+LMYTRGA+SVRCSCC TVNL P +NQVAH+ CGNCRTTLMYPYGA SVKCA
Sbjct: 61 GGCRTMLMYTRGASSVRCSCCQTVNLVPGPPPSNQVAHINCGNCRTTLMYPYGASSVKCA 120
Query: 531 LCHYITNVNMSNGRLQVPMHRPNGTTNSGALPSTSTSMPQSQTQTVVVENPMSVDSSGKL 352
+C ++TNVNMSNGR+ + +RPNGT G +PSTSTS P SQTQTVVVENPMSV+ SGKL
Sbjct: 121 VCQFVTNVNMSNGRVPLASNRPNGTAAPGTMPSTSTSTPPSQTQTVVVENPMSVNESGKL 180
Query: 351 VSN 343
VSN
Sbjct: 181 VSN 183
Score = 39.7 bits (91), Expect = 0.082
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = -3
Query: 870 SLRLVPGDTAMQ--SQLVCNGCRSILLYPRGATNVCCALCNTITAV 739
++ LVPG + + C CR+ L+YP GA++V CA+C +T V
Sbjct: 83 TVNLVPGPPPSNQVAHINCGNCRTTLMYPYGASSVKCAVCQFVTNV 128
>ref|NP_567599.2| zinc-finger protein Lsd1; protein id: At4g20380.1, supported by
cDNA: gi_1872520 [Arabidopsis thaliana]
gi|7488436|pir||T10580 zinc-finger protein Lsd1 -
Arabidopsis thaliana gi|1872521|gb|AAC49660.1|
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|1872523|gb|AAC49661.1| zinc-finger protein Lsd1
[Arabidopsis thaliana] gi|5262161|emb|CAB45804.1|
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|7268834|emb|CAB79038.1| zinc-finger protein Lsd1
[Arabidopsis thaliana]
Length = 189
Score = 251 bits (641), Expect(2) = 5e-66
Identities = 124/177 (70%), Positives = 141/177 (79%), Gaps = 11/177 (6%)
Frame = -3
Query: 840 MQSQLVCNGCRSILLYPRGATNVCCALCNTITAVPPPGM--DMSQLYCGGCRTLLMYTRG 667
MQ QLVC+GCR++L+YPRGA+NV CALCNTI VPPP DM+ + CGGCRT+LMYTRG
Sbjct: 6 MQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRG 65
Query: 666 AASVRCSCCHTVNLAPA-ANQVAHVP--------CGNCRTTLMYPYGAPSVKCALCHYIT 514
A+SVRCSCC T NL PA +NQVAH P CG+CRTTLMYPYGA SVKCA+C ++T
Sbjct: 66 ASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVT 125
Query: 513 NVNMSNGRLQVPMHRPNGTTNSGALPSTSTSMPQSQTQTVVVENPMSVDSSGKLVSN 343
NVNMSNGR+ +P +RPNGT PSTSTS P SQTQTVVVENPMSVD SGKLVSN
Sbjct: 126 NVNMSNGRVPLPTNRPNGT---ACPPSTSTSTPPSQTQTVVVENPMSVDESGKLVSN 179
Score = 23.5 bits (49), Expect(2) = 5e-66
Identities = 10/16 (62%), Positives = 13/16 (80%)
Frame = -1
Query: 359 GNWLAMLVVGVTTDKK 312
G ++ +VVGVTTDKK
Sbjct: 174 GKLVSNVVVGVTTDKK 189
>ref|NP_680728.1| zinc-finger protein Lsd1; protein id: At4g20380.2, supported by
cDNA: 38456., supported by cDNA: gi_19423935
[Arabidopsis thaliana] gi|19423936|gb|AAL87301.1|
putative zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|21436207|gb|AAM51391.1| putative zinc-finger protein
Lsd1 [Arabidopsis thaliana] gi|21593381|gb|AAM65330.1|
zinc-finger protein Lsd1 [Arabidopsis thaliana]
Length = 184
Score = 251 bits (641), Expect(2) = 5e-66
Identities = 124/177 (70%), Positives = 141/177 (79%), Gaps = 11/177 (6%)
Frame = -3
Query: 840 MQSQLVCNGCRSILLYPRGATNVCCALCNTITAVPPPGM--DMSQLYCGGCRTLLMYTRG 667
MQ QLVC+GCR++L+YPRGA+NV CALCNTI VPPP DM+ + CGGCRT+LMYTRG
Sbjct: 1 MQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRG 60
Query: 666 AASVRCSCCHTVNLAPA-ANQVAHVP--------CGNCRTTLMYPYGAPSVKCALCHYIT 514
A+SVRCSCC T NL PA +NQVAH P CG+CRTTLMYPYGA SVKCA+C ++T
Sbjct: 61 ASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVT 120
Query: 513 NVNMSNGRLQVPMHRPNGTTNSGALPSTSTSMPQSQTQTVVVENPMSVDSSGKLVSN 343
NVNMSNGR+ +P +RPNGT PSTSTS P SQTQTVVVENPMSVD SGKLVSN
Sbjct: 121 NVNMSNGRVPLPTNRPNGT---ACPPSTSTSTPPSQTQTVVVENPMSVDESGKLVSN 174
Score = 23.5 bits (49), Expect(2) = 5e-66
Identities = 10/16 (62%), Positives = 13/16 (80%)
Frame = -1
Query: 359 GNWLAMLVVGVTTDKK 312
G ++ +VVGVTTDKK
Sbjct: 169 GKLVSNVVVGVTTDKK 184
>ref|NP_564405.1| zinc-finger protein, putative; protein id: At1g32540.1, supported
by cDNA: gi_16323142 [Arabidopsis thaliana]
gi|16323143|gb|AAL15306.1| At1g32540/T9G5_1 [Arabidopsis
thaliana] gi|21436015|gb|AAM51585.1| At1g32540/T9G5_1
[Arabidopsis thaliana]
Length = 154
Score = 188 bits (477), Expect = 1e-46
Identities = 83/118 (70%), Positives = 99/118 (83%)
Frame = -3
Query: 852 GDTAMQSQLVCNGCRSILLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLMYT 673
G T+ QSQLVC+GCR++L+YP GAT+VCCA+CN +TAVPPPG +M+QL CGGC TLLMY
Sbjct: 27 GSTSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYI 86
Query: 672 RGAASVRCSCCHTVNLAPAANQVAHVPCGNCRTTLMYPYGAPSVKCALCHYITNVNMS 499
RGA SV+CSCCHTVNLA ANQVAHV CGNC LMY YGA SVKCA+C+++T+V S
Sbjct: 87 RGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQYGARSVKCAVCNFVTSVGGS 144
Score = 68.6 bits (166), Expect = 2e-10
Identities = 32/76 (42%), Positives = 47/76 (61%)
Frame = -3
Query: 858 VPGDTAMQSQLVCNGCRSILLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLM 679
VP +QLVC GC ++L+Y RGAT+V C+ C+T+ + ++ + CG C LLM
Sbjct: 64 VPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVN-LALEANQVAHVNCGNCMMLLM 122
Query: 678 YTRGAASVRCSCCHTV 631
Y GA SV+C+ C+ V
Sbjct: 123 YQYGARSVKCAVCNFV 138
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 999,360,647
Number of Sequences: 1393205
Number of extensions: 23785965
Number of successful extensions: 76110
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 65501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74295
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 64292115691
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
