Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002980A_C01 KMC002980A_c01
(444 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_218951.1| GTP-binding membrane protein (lepA) [Treponema ... 30 8.8
ref|NP_495925.1| Protein-tyrosine phosphatase with fibronectin t... 30 8.8
>ref|NP_218951.1| GTP-binding membrane protein (lepA) [Treponema pallidum]
gi|6016496|sp|O83523|LEPA_TREPA GTP-binding protein lepA
gi|7443605|pir||E71314 probable GTP-binding membrane
protein (lepA) - syphilis spirochete
gi|3322802|gb|AAC65498.1| GTP-binding membrane protein
(lepA) [Treponema pallidum]
Length = 605
Score = 29.6 bits (65), Expect = 8.8
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -3
Query: 382 SISKLYLHVHHSLEIAPVACVI-FPPCDVPDV 290
+IS LYL + H+LEI PV I P DVP V
Sbjct: 118 TISNLYLVLEHNLEIIPVINKIDLPTADVPRV 149
>ref|NP_495925.1| Protein-tyrosine phosphatase with fibronectin type III domain(s)
[Caenorhabditis elegans] gi|7503426|pir||T21913
hypothetical protein F44G4.8 - Caenorhabditis elegans
gi|3876889|emb|CAA90958.1| Hypothetical protein F44G4.8
[Caenorhabditis elegans] gi|3877080|emb|CAA90125.1|
Hypothetical protein F44G4.8 [Caenorhabditis elegans]
Length = 1367
Score = 29.6 bits (65), Expect = 8.8
Identities = 18/53 (33%), Positives = 29/53 (53%), Gaps = 4/53 (7%)
Frame = +1
Query: 115 PLKVGGTKRTQVYCKIKV----QKHLMIIYCILQIIGGSSAVRDSLSPHSGHS 261
P+ V GT Y + ++ Q+++ I YCILQ++ GSS S S + H+
Sbjct: 1300 PIDVFGTVCEMRYERCQMVQNEQQYIFIHYCILQVLQGSSPSPTSTSTGAHHN 1352
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 353,489,156
Number of Sequences: 1393205
Number of extensions: 7047871
Number of successful extensions: 13244
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13234
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 6655800768
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
