Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002975A_C01 KMC002975A_c01
(535 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175691.1| putative oxidoreductase; protein id: At1g52820.... 159 2e-38
gb|AAL14683.1| 2-oxoglutarate-dependent dioxygenase [Arabidopsis... 124 9e-28
ref|NP_192216.1| putative oxidoreductase; protein id: At4g03070.... 124 9e-28
gb|AAL14644.1|AF417856_1 AOP1.2 [Arabidopsis thaliana] 124 9e-28
gb|AAL14698.1| 2-oxoglutarate-dependent dioxygenase [Arabidopsis... 122 2e-27
>ref|NP_175691.1| putative oxidoreductase; protein id: At1g52820.1 [Arabidopsis
thaliana] gi|25285705|pir||D96569 probable
oxidoreductase, 38288-39393 [imported] - Arabidopsis
thaliana gi|12324633|gb|AAG52269.1|AC019018_6 putative
oxidoreductase; 38288-39393 [Arabidopsis thaliana]
Length = 317
Score = 159 bits (403), Expect = 2e-38
Identities = 72/98 (73%), Positives = 84/98 (85%)
Frame = -3
Query: 533 KPSSESFVVMIGDSLHAWSNGRLHSPFHRVMMTGNEARYSTGLFSIPKGEYIIKTPEELV 354
KP+ +SF VMIGDSL+A NGRLHSP+HRVMMTG E RYS GLFSIPK +I+ +P+ELV
Sbjct: 220 KPTQDSFTVMIGDSLYALLNGRLHSPYHRVMMTGTETRYSLGLFSIPKAGHIVSSPDELV 279
Query: 353 DEEHPLLFKPFDHVEFLKYYYTEKGQRDQFALRTYCGV 240
DEEHP LFKPFDHVEFL++YYTE GQR Q AL+TYCG+
Sbjct: 280 DEEHPRLFKPFDHVEFLQFYYTEAGQRSQSALKTYCGI 317
>gb|AAL14683.1| 2-oxoglutarate-dependent dioxygenase [Arabidopsis thaliana]
Length = 320
Score = 124 bits (310), Expect = 9e-28
Identities = 58/95 (61%), Positives = 74/95 (77%)
Frame = -3
Query: 533 KPSSESFVVMIGDSLHAWSNGRLHSPFHRVMMTGNEARYSTGLFSIPKGEYIIKTPEELV 354
KPS +S +VM+GDSL A NGRLHSP+HRV+MTG + RYSTGLFSIPK II +PEELV
Sbjct: 223 KPSQDSVLVMVGDSLCALLNGRLHSPYHRVIMTGKKTRYSTGLFSIPKTGVIIDSPEELV 282
Query: 353 DEEHPLLFKPFDHVEFLKYYYTEKGQRDQFALRTY 249
D+EHP +FKPF++ +FL ++ TE G+ Q AL +
Sbjct: 283 DKEHPRIFKPFEYTDFLHFFQTEAGRIAQSALHAF 317
>ref|NP_192216.1| putative oxidoreductase; protein id: At4g03070.1, supported by
cDNA: gi_16118884, supported by cDNA: gi_16118886,
supported by cDNA: gi_16118888 [Arabidopsis thaliana]
gi|7487987|pir||T01386 oxidoreductase homolog T4I9.5 -
Arabidopsis thaliana gi|3924597|gb|AAC79098.1| putative
oxidoreductase [Arabidopsis thaliana]
gi|7270177|emb|CAB77792.1| putative oxidoreductase
[Arabidopsis thaliana]
gi|16118885|gb|AAL14643.1|AF417855_1 AOP1.1 [Arabidopsis
thaliana]
Length = 322
Score = 124 bits (310), Expect = 9e-28
Identities = 58/95 (61%), Positives = 74/95 (77%)
Frame = -3
Query: 533 KPSSESFVVMIGDSLHAWSNGRLHSPFHRVMMTGNEARYSTGLFSIPKGEYIIKTPEELV 354
KPS +S +VM+GDSL A NGRLHSP+HRV+MTG + RYSTGLFSIPK II +PEELV
Sbjct: 225 KPSQDSVLVMVGDSLCALLNGRLHSPYHRVIMTGKKTRYSTGLFSIPKTGVIIDSPEELV 284
Query: 353 DEEHPLLFKPFDHVEFLKYYYTEKGQRDQFALRTY 249
D+EHP +FKPF++ +FL ++ TE G+ Q AL +
Sbjct: 285 DKEHPRIFKPFEYTDFLHFFQTEAGRIAQSALHAF 319
>gb|AAL14644.1|AF417856_1 AOP1.2 [Arabidopsis thaliana]
Length = 321
Score = 124 bits (310), Expect = 9e-28
Identities = 58/95 (61%), Positives = 74/95 (77%)
Frame = -3
Query: 533 KPSSESFVVMIGDSLHAWSNGRLHSPFHRVMMTGNEARYSTGLFSIPKGEYIIKTPEELV 354
KPS +S +VM+GDSL A NGRLHSP+HRV+MTG + RYSTGLFSIPK II +PEELV
Sbjct: 224 KPSQDSVLVMVGDSLCALLNGRLHSPYHRVIMTGKKTRYSTGLFSIPKTGVIIDSPEELV 283
Query: 353 DEEHPLLFKPFDHVEFLKYYYTEKGQRDQFALRTY 249
D+EHP +FKPF++ +FL ++ TE G+ Q AL +
Sbjct: 284 DKEHPRIFKPFEYTDFLHFFQTEAGRIAQSALHAF 318
>gb|AAL14698.1| 2-oxoglutarate-dependent dioxygenase [Arabidopsis thaliana]
Length = 301
Score = 122 bits (307), Expect = 2e-27
Identities = 58/92 (63%), Positives = 73/92 (79%)
Frame = -3
Query: 533 KPSSESFVVMIGDSLHAWSNGRLHSPFHRVMMTGNEARYSTGLFSIPKGEYIIKTPEELV 354
KPS +S +VM+GDSL A NGRLHSP+HRV+MTG + RYSTGLFSIPK II +PEELV
Sbjct: 210 KPSQDSVLVMVGDSLCALLNGRLHSPYHRVIMTGKKTRYSTGLFSIPKTGVIIDSPEELV 269
Query: 353 DEEHPLLFKPFDHVEFLKYYYTEKGQRDQFAL 258
D+EHP +FKPF++ +FL ++ TE G+ Q AL
Sbjct: 270 DKEHPRIFKPFEYTDFLHFFQTEAGRIAQSAL 301
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 461,942,095
Number of Sequences: 1393205
Number of extensions: 9832072
Number of successful extensions: 22920
Number of sequences better than 10.0: 529
Number of HSP's better than 10.0 without gapping: 22127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22858
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
