Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002974A_C01 KMC002974A_c01
(590 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_113402.1| hypothetical protein [Guillardia theta] gi|4583... 36 0.32
gb|ZP_00104022.1| hypothetical protein [Prochlorococcus marinus ... 33 3.5
gb|EAA18107.1| pKU-alpha protein kinase, putative [Plasmodium yo... 33 3.5
gb|AAL88748.1| envelope glycoprotein [Human immunodeficiency vir... 32 4.6
ref|NP_113281.1| 26S proteasome SU A5 [Guillardia theta] gi|2529... 32 6.0
>ref|NP_113402.1| hypothetical protein [Guillardia theta] gi|4583665|emb|CAB40403.1|
hypothetical protein [Guillardia theta]
Length = 546
Score = 36.2 bits (82), Expect = 0.32
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 7/123 (5%)
Frame = +1
Query: 109 DNTLLVSLTLNLWE-----LLPPIGPYLQPSPIKTLQKITH--LSYYNL*YNTPL*SFPK 267
DNT++ N W L I PYL I+ L+ I + L YYN + L + K
Sbjct: 132 DNTIISG---NSWGHSFSIYLKKIYPYLYFYEIRILKNIKNYKLQYYNF-FLLFLNTTKK 187
Query: 268 LLFFHYTSKAKTRSQKL*SFFLKKTWIFYYN*TNHTYFNFIHLLFKS*NQNIIMANHCKF 447
L++F SK F+ K + YY TN++YFN+ + K ++I +N
Sbjct: 188 LVYFFINSKKNL-------FYNDKNVLNYYLETNNSYFNYYDEVLKKNILSLIYSNGTTL 240
Query: 448 YIL 456
+++
Sbjct: 241 FLI 243
>gb|ZP_00104022.1| hypothetical protein [Prochlorococcus marinus subsp. pastoris str.
CCMP1378]
Length = 813
Score = 32.7 bits (73), Expect = 3.5
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +2
Query: 287 LLKLKPDPKSCNPSSLKKPGYFITTKLTTHTLISFISCLKVKTKTSSWLITANSTFFSSK 466
L K K+ NPS+ + G + L T ++S C K K K +L++ FF K
Sbjct: 671 LFKFDLSDKNLNPSTKQSLGLLLVNLLPTEQIVS---CCKSKDKEILYLVSKKGKFFKLK 727
Query: 467 VE 472
++
Sbjct: 728 ID 729
>gb|EAA18107.1| pKU-alpha protein kinase, putative [Plasmodium yoelii yoelii]
Length = 765
Score = 32.7 bits (73), Expect = 3.5
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Frame = +2
Query: 224 ITTYNIILHYNPSLNCYSFTILLKLKPDPKSCNPSS---LKKPGYFITTKLTTHTLISFI 394
+ YN IL+ N + S+ +LK K +S P S + +F + T HTL F+
Sbjct: 361 VKNYNAILNENEEESELSWLTMLKKKSHNRSILPPSRDTFRDGTHFSNCRATEHTLKFFL 420
Query: 395 SCLKVKTK 418
S L + TK
Sbjct: 421 SLLSLLTK 428
>gb|AAL88748.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 208
Score = 32.3 bits (72), Expect = 4.6
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 21 FFFERNNNLLNTIYHNEQGLYKGMGNPLL*QHFTCKLD 134
FF+ +NL N+ YH+ G YK GN CKL+
Sbjct: 114 FFYCNTSNLFNSTYHSNNGTYKYNGNSSSPITLQCKLN 151
>ref|NP_113281.1| 26S proteasome SU A5 [Guillardia theta] gi|25290055|pir||F90088 26S
proteasome SU A5 [imported] - Guillardia theta
nucleomorph gi|13794466|gb|AAK39841.1|AF165818_49 26S
proteasome SU A5 [Guillardia theta]
Length = 232
Score = 32.0 bits (71), Expect = 6.0
Identities = 16/30 (53%), Positives = 21/30 (69%)
Frame = -3
Query: 471 STLLEKNVEFAVISHDDVLVLTFKQEMNEI 382
S L EKNVE A IS + L + FK+E+N+I
Sbjct: 199 SILNEKNVEAAQISESNTLRILFKEEINQI 228
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 514,834,029
Number of Sequences: 1393205
Number of extensions: 11515150
Number of successful extensions: 23904
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 23253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23897
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
