Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002971A_C01 KMC002971A_c01
(506 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176576.1| hypothetical protein; protein id: At1g63930.1 [... 67 2e-10
ref|NP_192869.1| putative protein; protein id: At4g11300.1, supp... 40 0.015
gb|AAM62975.1| unknown [Arabidopsis thaliana] 37 0.13
gb|AAM61006.1| unknown [Arabidopsis thaliana] 33 1.9
ref|NP_565086.1| expressed protein; protein id: At1g74450.1, sup... 33 1.9
>ref|NP_176576.1| hypothetical protein; protein id: At1g63930.1 [Arabidopsis
thaliana] gi|25354334|pir||D96664 hypothetical protein
T12P18.5 [imported] - Arabidopsis thaliana
gi|12325015|gb|AAG52457.1|AC010852_14 hypothetical
protein; 12785-11538 [Arabidopsis thaliana]
Length = 415
Score = 66.6 bits (161), Expect = 2e-10
Identities = 43/100 (43%), Positives = 46/100 (46%), Gaps = 43/100 (43%)
Frame = -3
Query: 504 EWKKKEKKGFVGLLEEXQRMEKLG------------------------------------ 433
EWKKKEKKG GL+EE RMEKLG
Sbjct: 316 EWKKKEKKGSAGLMEEMTRMEKLGHSLMEFADGFHYPAEKDAAESAAVQVAEMAEICRRM 375
Query: 432 -------QPQIREVFHRLVRSRTEFLLVLDQGGKSSAPTV 334
Q QIREVFHR+VRSR E L VL+Q GK SAP V
Sbjct: 376 EEELVPLQQQIREVFHRIVRSRAEILEVLEQAGKVSAPVV 415
>ref|NP_192869.1| putative protein; protein id: At4g11300.1, supported by cDNA:
17771. [Arabidopsis thaliana] gi|7486699|pir||T13021
hypothetical protein F8L21.90 - Arabidopsis thaliana
gi|5596476|emb|CAB51414.1| putative protein [Arabidopsis
thaliana] gi|7267829|emb|CAB81231.1| putative protein
[Arabidopsis thaliana]
Length = 371
Score = 40.0 bits (92), Expect = 0.015
Identities = 29/86 (33%), Positives = 39/86 (44%), Gaps = 39/86 (45%)
Frame = -3
Query: 504 EWKKKEKKGFVGLLEEXQRMEKLG------------------------------------ 433
E K+KE +G GL+EE QRME++G
Sbjct: 286 EMKRKETRGG-GLMEEMQRMERIGLKLMEFSEGFRFNGEEDVVAEVAEMEEICRKMEDGL 344
Query: 432 ---QPQIREVFHRLVRSRTEFLLVLD 364
Q ++REVFHRLV+SR+E L V+D
Sbjct: 345 EGLQRRVREVFHRLVKSRSEILEVID 370
>gb|AAM62975.1| unknown [Arabidopsis thaliana]
Length = 371
Score = 37.0 bits (84), Expect = 0.13
Identities = 28/86 (32%), Positives = 38/86 (43%), Gaps = 39/86 (45%)
Frame = -3
Query: 504 EWKKKEKKGFVGLLEEXQRMEKLG------------------------------------ 433
E K+KE +G GL+EE QRME++
Sbjct: 286 EMKRKETRGG-GLMEEMQRMERIWLKLMEFSEGFRFNGEEDVVAEVAEMEEICRKMEDGL 344
Query: 432 ---QPQIREVFHRLVRSRTEFLLVLD 364
Q ++REVFHRLV+SR+E L V+D
Sbjct: 345 EGLQRRVREVFHRLVKSRSEILEVID 370
>gb|AAM61006.1| unknown [Arabidopsis thaliana]
Length = 397
Score = 33.1 bits (74), Expect = 1.9
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 13/43 (30%)
Frame = -3
Query: 465 LEEXQRMEKLGQPQ-------------IREVFHRLVRSRTEFL 376
+E +R+E+LG+ Q +REVFHR+VRSRTE L
Sbjct: 345 MEVRERVEELGKLQEALKNGLDPFERKVREVFHRIVRSRTEGL 387
>ref|NP_565086.1| expressed protein; protein id: At1g74450.1, supported by cDNA:
108193., supported by cDNA: gi_16226873, supported by
cDNA: gi_18176415 [Arabidopsis thaliana]
gi|25354336|pir||D96773 unknown protein F1M20.13
[imported] - Arabidopsis thaliana
gi|12324802|gb|AAG52364.1|AC011765_16 unknown protein;
39057-40250 [Arabidopsis thaliana]
gi|16226874|gb|AAL16287.1|AF428357_1 At1g74450/F1M20_13
[Arabidopsis thaliana] gi|18176416|gb|AAL60040.1|
unknown protein [Arabidopsis thaliana]
gi|22136856|gb|AAM91772.1| unknown protein [Arabidopsis
thaliana]
Length = 397
Score = 33.1 bits (74), Expect = 1.9
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 13/43 (30%)
Frame = -3
Query: 465 LEEXQRMEKLGQPQ-------------IREVFHRLVRSRTEFL 376
+E +R+E+LG+ Q +REVFHR+VRSRTE L
Sbjct: 345 MEVRERVEELGKLQEALKNGLDPFERKVREVFHRIVRSRTEGL 387
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 465,954,509
Number of Sequences: 1393205
Number of extensions: 10358696
Number of successful extensions: 39546
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 35839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39407
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
