Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002967A_C01 KMC002967A_c01
(405 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_076459.1| putative G protein-coupled receptor snGPCR32 [R... 32 2.5
sp|Q8K5E0|EDG7_RAT Lysophosphatidic acid receptor Edg-7 (LPA rec... 32 2.5
gb|AAK07694.1| endothelial differentiation G-protein-coupled rec... 31 3.2
ref|NP_510224.1| Predicted CDS, putative nuclear protein, nemato... 31 3.2
ref|XP_220353.1| similar to RalA binding protein 1 [Rattus norve... 30 7.2
>ref|NP_076459.1| putative G protein-coupled receptor snGPCR32 [Rattus norvegicus]
gi|10880464|gb|AAG24262.1|AF097733_1 putative G
protein-coupled receptor snGPCR32 [Rattus norvegicus]
Length = 345
Score = 31.6 bits (70), Expect = 2.5
Identities = 23/96 (23%), Positives = 37/96 (37%)
Frame = +3
Query: 18 FFFLYIPDVMVQLYIKYKGEGVYMDLVW**CTMTTGIQNHGG*NIDMKNREKKLIYYLSL 197
FF + + V + +Y+K K T + H +I + KL+ +
Sbjct: 190 FFIMVVVYVRIYMYVKRK---------------TNVLSPHTSGSISRRRAPMKLMKTVMT 234
Query: 198 YLHLPITFQSPSIV*SLQTTGLRCLRCQFGHCKNWF 305
L + +P +V L GL C +C H K WF
Sbjct: 235 VLGAFVVCWTPGLV-VLLLDGLNCKQCNVQHVKRWF 269
>sp|Q8K5E0|EDG7_RAT Lysophosphatidic acid receptor Edg-7 (LPA receptor 3) (LPA-3)
(snGPCR32) gi|20387093|dbj|BAB91247.1| lysophosphatidic
acid G protein-coupled receptor [Rattus norvegicus]
Length = 354
Score = 31.6 bits (70), Expect = 2.5
Identities = 23/96 (23%), Positives = 37/96 (37%)
Frame = +3
Query: 18 FFFLYIPDVMVQLYIKYKGEGVYMDLVW**CTMTTGIQNHGG*NIDMKNREKKLIYYLSL 197
FF + + V + +Y+K K T + H +I + KL+ +
Sbjct: 199 FFIMVVVYVRIYMYVKRK---------------TNVLSPHTSGSISRRRAPMKLMKTVMT 243
Query: 198 YLHLPITFQSPSIV*SLQTTGLRCLRCQFGHCKNWF 305
L + +P +V L GL C +C H K WF
Sbjct: 244 VLGAFVVCWTPGLV-VLLLDGLNCKQCNVQHVKRWF 278
>gb|AAK07694.1| endothelial differentiation G-protein-coupled receptor 7 [Cavia
porcellus]
Length = 194
Score = 31.2 bits (69), Expect = 3.2
Identities = 22/96 (22%), Positives = 38/96 (38%)
Frame = +3
Query: 18 FFFLYIPDVMVQLYIKYKGEGVYMDLVW**CTMTTGIQNHGG*NIDMKNREKKLIYYLSL 197
FF + + + + +Y+K K T + +H +I + KL+ +
Sbjct: 72 FFIMVVVYLRIYMYVKRK---------------TNVLSSHTSGSISRRRAPMKLMKTVMT 116
Query: 198 YLHLPITFQSPSIV*SLQTTGLRCLRCQFGHCKNWF 305
L + +P +V L GL C +C H K WF
Sbjct: 117 VLGAFVVCWTPGLV-VLLLDGLNCTQCGVQHVKRWF 151
>ref|NP_510224.1| Predicted CDS, putative nuclear protein, nematode specific
[Caenorhabditis elegans] gi|7497675|pir||T20078
hypothetical protein C49F8.1 - Caenorhabditis elegans
gi|3875035|emb|CAA94124.1| Hypothetical protein C49F8.1
[Caenorhabditis elegans]
Length = 407
Score = 31.2 bits (69), Expect = 3.2
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 7/50 (14%)
Frame = -3
Query: 178 SFFSLFFI-SIF*PP*F*IPVVIVH------YYHTRSIYTPSPLYFMYNC 50
SFF F + S F PP F +P + +H Y+ +R+ ++PSPL+ NC
Sbjct: 66 SFFHFFSLHSFFTPPPF-LPFLRLHFAYIHPYFFSRNNFSPSPLFSFGNC 114
>ref|XP_220353.1| similar to RalA binding protein 1 [Rattus norvegicus]
Length = 579
Score = 30.0 bits (66), Expect = 7.2
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 147 SSLHDFEFLLSLYTTTTLGPYIHPPPCILCITVPSRLEYRE 25
+++ D +LL TT G ++ PP LC TV +L+ E
Sbjct: 83 AAILDLLYLLKKKGLTTTGVFLEPPSITLCQTVKDKLDSEE 123
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 346,566,755
Number of Sequences: 1393205
Number of extensions: 6969848
Number of successful extensions: 15588
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 15275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15587
length of database: 448,689,247
effective HSP length: 110
effective length of database: 295,436,697
effective search space used: 7090480728
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
