Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002966A_C01 KMC002966A_c01
(690 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB33412.1| putative senescence-associated protein [Pisum sa... 170 1e-41
ref|NP_565000.1| expressed protein; protein id: At1g70780.1, sup... 147 1e-34
ref|NP_173728.1| unknown protein; protein id: At1g23150.1 [Arabi... 147 1e-34
pir||G86365 T26J12.8 protein - Arabidopsis thaliana gi|2829897|g... 135 5e-31
gb|AAL16139.1|AF428307_1 At1g70780/F5A18_4 [Arabidopsis thaliana] 124 9e-28
>dbj|BAB33412.1| putative senescence-associated protein [Pisum sativum]
Length = 221
Score = 170 bits (431), Expect = 1e-41
Identities = 90/120 (75%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Frame = -1
Query: 690 SINVLGSAGPIRFVVNEEELVAAVIDTALKSYAREGRLPVLGTDTTGFALYCPHVGSDAL 511
SINV GSAGPIRFVV EEELVAAVIDTALKSYAREGRLPVLG D FALYCP VGSDAL
Sbjct: 57 SINVFGSAGPIRFVVKEEELVAAVIDTALKSYAREGRLPVLGGDIRTFALYCPLVGSDAL 116
Query: 510 SPWDRIGSHGARNFMLCKKPQGSPGVAESAGT-TPLPRRRSSGSWKAWFNKSLSLKISSH 334
SPWD IGS GARNFMLCKKPQ + G + GT T + R GS KAWF++SL+LKIS H
Sbjct: 117 SPWDTIGSVGARNFMLCKKPQATTGDEAANGTGTEVVSRSRGGSGKAWFHQSLNLKISIH 176
>ref|NP_565000.1| expressed protein; protein id: At1g70780.1, supported by cDNA:
gi_13358235, supported by cDNA: gi_15146213, supported
by cDNA: gi_16226337 [Arabidopsis thaliana]
gi|25372855|pir||D96732 hypothetical protein F15H11.3
[imported] - Arabidopsis thaliana
gi|5902391|gb|AAD55493.1|AC008148_3 Unknown protein
[Arabidopsis thaliana]
gi|11762244|gb|AAG40399.1|AF325047_1 At1g70780
[Arabidopsis thaliana]
gi|12324748|gb|AAG52330.1|AC011663_9 unknown protein;
8615-9128 [Arabidopsis thaliana]
gi|15146214|gb|AAK83590.1| At1g70780/F5A18_4
[Arabidopsis thaliana] gi|23506215|gb|AAN31119.1|
At1g70780/F5A18_4 [Arabidopsis thaliana]
Length = 140
Score = 147 bits (372), Expect = 1e-34
Identities = 77/121 (63%), Positives = 90/121 (73%), Gaps = 2/121 (1%)
Frame = -1
Query: 690 SINVLGSAGPIRFVVNEEELVAAVIDTALKSYAREGRLPVLGTDTTGFALYCPHVGSDAL 511
S+ VLGSAGPIRFV E++LVA+VIDTALK YAREGRLP+LG+D F LYCP VG +AL
Sbjct: 21 SVTVLGSAGPIRFVAYEDDLVASVIDTALKGYAREGRLPLLGSDFNDFLLYCPMVGPEAL 80
Query: 510 SPWDRIGSHGARNFMLCKKPQGSPGVAESAG--TTPLPRRRSSGSWKAWFNKSLSLKISS 337
S WD IGS GARNFMLC+KP+ V ES G + + R GS KAW NKS +LK+SS
Sbjct: 81 STWDAIGSLGARNFMLCRKPE-EKKVEESNGRSDSTINGARKGGSLKAWINKSFNLKVSS 139
Query: 336 H 334
H
Sbjct: 140 H 140
>ref|NP_173728.1| unknown protein; protein id: At1g23150.1 [Arabidopsis thaliana]
gi|27754627|gb|AAO22759.1| unknown protein [Arabidopsis
thaliana] gi|28394037|gb|AAO42426.1| unknown protein
[Arabidopsis thaliana]
Length = 141
Score = 147 bits (372), Expect = 1e-34
Identities = 74/123 (60%), Positives = 87/123 (70%), Gaps = 4/123 (3%)
Frame = -1
Query: 690 SINVLGSAGPIRFVVNEEELVAAVIDTALKSYAREGRLPVLGTDTTGFALYCPHVGSDAL 511
S+ LGSAGPIRFV NE +LVA+VIDTALK YAREGRLP+LG+D F YCP VG AL
Sbjct: 19 SVTFLGSAGPIRFVANEGDLVASVIDTALKCYAREGRLPILGSDFNDFVFYCPMVGPGAL 78
Query: 510 SPWDRIGSHGARNFMLCKKPQGSPGVAESAGTTPLP----RRRSSGSWKAWFNKSLSLKI 343
SPW+ IGS G RNFMLCKK V E G + P R+ + GS+KAW NKSL LK+
Sbjct: 79 SPWEAIGSVGVRNFMLCKKKPEEKKVEEDKGRSNFPINGARKGAGGSFKAWINKSLRLKV 138
Query: 342 SSH 334
++H
Sbjct: 139 TTH 141
>pir||G86365 T26J12.8 protein - Arabidopsis thaliana gi|2829897|gb|AAC00605.1|
Unknown protein [Arabidopsis thaliana]
Length = 151
Score = 135 bits (340), Expect = 5e-31
Identities = 71/133 (53%), Positives = 86/133 (64%), Gaps = 14/133 (10%)
Frame = -1
Query: 690 SINVLGSAGPIRFVVNEEELVAAVIDTALKSYAREGRLPVLGTDTTGFALYCPHVGS--- 520
S+ LGSAGPIRFV NE +LVA+VIDTALK YAREGRLP+LG+D F YCP VG
Sbjct: 19 SVTFLGSAGPIRFVANEGDLVASVIDTALKCYAREGRLPILGSDFNDFVFYCPMVGPGGN 78
Query: 519 -------DALSPWDRIGSHGARNFMLCKKPQGSPGVAESAGTTPLP----RRRSSGSWKA 373
++ PW+ IGS G RNFMLCKK V E G + P R+ + GS+KA
Sbjct: 79 LSNTQSFSSVFPWEAIGSVGVRNFMLCKKKPEEKKVEEDKGRSNFPINGARKGAGGSFKA 138
Query: 372 WFNKSLSLKISSH 334
W NKSL LK+++H
Sbjct: 139 WINKSLRLKVTTH 151
>gb|AAL16139.1|AF428307_1 At1g70780/F5A18_4 [Arabidopsis thaliana]
Length = 149
Score = 124 bits (312), Expect = 9e-28
Identities = 63/91 (69%), Positives = 72/91 (78%)
Frame = -1
Query: 690 SINVLGSAGPIRFVVNEEELVAAVIDTALKSYAREGRLPVLGTDTTGFALYCPHVGSDAL 511
S+ VLGSAGPIRFV E++LVA+VIDTALK YAREGRLP+LG+D F LYCP VG +AL
Sbjct: 21 SVTVLGSAGPIRFVAYEDDLVASVIDTALKGYAREGRLPLLGSDFNDFLLYCPMVGPEAL 80
Query: 510 SPWDRIGSHGARNFMLCKKPQGSPGVAESAG 418
S WD IGS GARNFMLC+KP+ V ES G
Sbjct: 81 STWDAIGSLGARNFMLCRKPE-EKKVEESNG 110
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 615,767,044
Number of Sequences: 1393205
Number of extensions: 14209071
Number of successful extensions: 46564
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 43848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46501
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31118763720
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
