Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002965A_C01 KMC002965A_c01
(404 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM08532.1|AC079935_4 Putative hydrolase [Oryza sativa] gi|19... 39 0.015
dbj|BAC10840.1| similar to hydrolase [Oryza sativa (japonica cul... 36 0.10
gb|AAM61205.1| putative hydrolase [Arabidopsis thaliana] 32 1.9
ref|NP_568075.1| Expressed protein; protein id: At4g39955.1, sup... 32 1.9
emb|CAB64326.1| vacA protein [Helicobacter pylori] 32 2.5
>gb|AAM08532.1|AC079935_4 Putative hydrolase [Oryza sativa]
gi|19920233|gb|AAM08665.1|AC113338_21 Putative hydrolase
[Oryza sativa (japonica cultivar-group)]
Length = 401
Score = 38.9 bits (89), Expect = 0.015
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = -3
Query: 402 KNAGHAIHKEKPKDLCMALKSFLFSPITPSLQGNNGN 292
KNAGHAI++EKP +LC +K+ + P G+ G+
Sbjct: 306 KNAGHAINREKPAELCRLIKNCIADPSVKYRDGHKGS 342
>dbj|BAC10840.1| similar to hydrolase [Oryza sativa (japonica cultivar-group)]
Length = 359
Score = 36.2 bits (82), Expect = 0.10
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = -3
Query: 402 KNAGHAIHKEKPKDLCMALKSFLFSPITPSLQGNN---GNGH 286
+NAGHA++ EKPKD+C + F +T L GN H
Sbjct: 292 RNAGHAVNLEKPKDVCRNIIEFFQEGVTEPLNDEKRFFGNSH 333
>gb|AAM61205.1| putative hydrolase [Arabidopsis thaliana]
Length = 328
Score = 32.0 bits (71), Expect = 1.9
Identities = 13/23 (56%), Positives = 18/23 (77%)
Frame = -3
Query: 402 KNAGHAIHKEKPKDLCMALKSFL 334
K GHAI++EKPK++ +KSFL
Sbjct: 275 KKTGHAINEEKPKEMYKHMKSFL 297
>ref|NP_568075.1| Expressed protein; protein id: At4g39955.1, supported by cDNA:
114014. [Arabidopsis thaliana]
Length = 328
Score = 32.0 bits (71), Expect = 1.9
Identities = 13/23 (56%), Positives = 18/23 (77%)
Frame = -3
Query: 402 KNAGHAIHKEKPKDLCMALKSFL 334
K GHAI++EKPK++ +KSFL
Sbjct: 275 KKTGHAINEEKPKEMYKHMKSFL 297
>emb|CAB64326.1| vacA protein [Helicobacter pylori]
Length = 120
Score = 31.6 bits (70), Expect = 2.5
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +1
Query: 226 NRYSNISITLKISSFSLIHLVTVT-VVSLQRWSDGTEEEGFQSHAQVLGL 372
N+ + + + I +F + LV T V+S+ +++D TE+ G QSH V+ L
Sbjct: 58 NKLTTAATNVSIKNFDIKELVVTTNVLSVGKYTDFTEDIGDQSHIGVVSL 107
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 361,347,963
Number of Sequences: 1393205
Number of extensions: 7515707
Number of successful extensions: 14651
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 14347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14649
length of database: 448,689,247
effective HSP length: 110
effective length of database: 295,436,697
effective search space used: 7090480728
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
