KMC002963A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC002963A_C01 KMC002963A_c01
caagaatGAACATACCTTTTTTTATGGATAGAGATAAAAAAAAAAATACATTCACAATGC
ACTTAACTGGTATCGATACACATGCTCATTCCTTAGACTGTCATATTTAGTAATGTTTGT
TTAGGAGCTGGGCTTTCTATCCTATACCAAGGAATGCAAGGGAGAACACTTCAAATTTCA
AATATTATCAAGGGCAACATACATACACTTGTTTCCAATTCTCGGAGGATAGATTTAGAG
GAAGAAAAATGATATATTCTACAACACAACAAAACGAAATAACCAAAATATGGCCCTGCA
ATATCAGCAACTACTTTGAAGAAGATCAGGATGAGAAGTGGTAACCGTATCATTTGAAAG
TGGAGAATCTGGGAAGCTTGTCTCTTAAATAGTACAATCTTGCTCTTCTGACTTTACGGT
GGTTTACCACTTTGATTTCTTTGATGTTTGGTGAGTAAATTGGGAAGACAATCTCAACCC
CTGTGCCAGCAATAATCCTTCGGATTCGAATAGTTGTGTGAATACCAGCATTTTGTCTTG
AGATGACTATACCTTTATAAATAGACAACCTACGCTTGTTCTCAGGAACTTCCAGTTTGA
TTTCCACAACATCTCCAGTCCTAATTTCTGGAGTCGGCCTCATGCTTTCCGATGCCTCAA
TTGCCCTCTGATTCAATATCCCCATAACATCTCCAAGCTTGACTCGTTGCTTTCTAGGGG
GCTTGGGTTGCTCCACCTCAGAATCCGAAGCTAGTTCTGCTTCTCCATCTTCAGGAACCT
GATCAACGCTACCTTCAGCTTCTGGAACTTCACCAGCATTGTCGGAAGCAGCGTCGACAT
TGGAGTCAGCTCTGACAACAAAAGAGGGTTTGGCAGAGAGAGGGTTGTTGCAACGCCATG
AAATTGAGGTGGAGGAAATCAACGGAAAGTTACGAGAACCGAGGCAAGAAGATACACCGA
GCTTGGTTGGAGAACATTGGTTTGGGGCAAAcagtaacaacccttgctgaagaaaaactt
gagaagccatgatgatgatgaagagggttttatgtacagagtgagttgact
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002963A_C01 KMC002963A_c01
(1071 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF64312.1|AF250384_1 plastid ribosomal protein L19 precursor... 232 7e-60
ref|NP_567531.1| putative protein; protein id: At4g17560.1, supp... 232 9e-60
dbj|BAA97152.1| contains similarity to plastid ribosomal protein... 227 2e-58
gb|AAM64533.1| contains similarity to plastid ribosomal protein ... 227 2e-58
ref|NP_568677.1| putative protein; protein id: At5g47190.1, supp... 227 2e-58
>gb|AAF64312.1|AF250384_1 plastid ribosomal protein L19 precursor [Spinacia oleracea]
Length = 233
Score = 232 bits (592), Expect = 7e-60
Identities = 140/246 (56%), Positives = 171/246 (68%), Gaps = 20/246 (8%)
Frame = -3
Query: 1030 MASQVFLQQGLLLFAPN---QCSPTKLGVSSCLGS-RNFPLISSTS----ISWRCNNPLS 875
MAS+V L Q LL+ N QC P K + + S R F L S+ +S +N S
Sbjct: 1 MASKV-LPQALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFS 59
Query: 874 ----------AKPSFVVR--ADSNVDAASDNAGEVPEAEGSVDQVPEDGEAELASDSEVE 731
A+ SFVVR A+ + DA +++ V E E +P + EAE
Sbjct: 60 SNFSSIFSFPARNSFVVRSEAEDSSDAPAESVAVVAEEE-----LPVESEAEA------- 107
Query: 730 QPKPPRKQRVKLGDVMGILNQRAIEASESMRPTPEIRTGDVVEIKLEVPENKRRLSIYKG 551
+ +PPR+QRVKLGD+MGILN++A+ A+E +RP P IRTGD+V+I+LEVPENKRRLS+YKG
Sbjct: 108 EERPPRQQRVKLGDIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKG 167
Query: 550 IVISRQNAGIHTTIRIRRIIAGTGVEIVFPIYSPNIKEIKVVNHRKVRRARLYYLRDKLP 371
IVISRQNAGIHTTIRIRRIIAG GVEIVFP+YSPNIKEIKVV+HRKVR+ARLYYLRDKLP
Sbjct: 168 IVISRQNAGIHTTIRIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKLP 227
Query: 370 RFSTFK 353
R STFK
Sbjct: 228 RLSTFK 233
>ref|NP_567531.1| putative protein; protein id: At4g17560.1, supported by cDNA:
2161., supported by cDNA: gi_17065489, supported by
cDNA: gi_20148592 [Arabidopsis thaliana]
gi|17065490|gb|AAL32899.1| Unknown protein [Arabidopsis
thaliana] gi|20148593|gb|AAM10187.1| unknown protein
[Arabidopsis thaliana] gi|21554252|gb|AAM63327.1|
contains similarity to plastid ribosomal protein L19
[Arabidopsis thaliana]
Length = 225
Score = 232 bits (591), Expect = 9e-60
Identities = 123/172 (71%), Positives = 139/172 (80%), Gaps = 2/172 (1%)
Frame = -3
Query: 862 FVVRADS-NVDAASDN-AGEVPEAEGSVDQVPEDGEAELASDSEVEQPKPPRKQRVKLGD 689
F+VRA+ N +A S+ E+ + EG+V++V E KP RK R+KLGD
Sbjct: 68 FIVRAEEGNTEAESEEFVAEIADTEGNVEEVVE--------------AKPTRKPRIKLGD 113
Query: 688 VMGILNQRAIEASESMRPTPEIRTGDVVEIKLEVPENKRRLSIYKGIVISRQNAGIHTTI 509
VMGILNQ+AIE +E +RP PEIRTGD+VEIKLEVPENKRRLSIYKGIV+SRQNAGIHTTI
Sbjct: 114 VMGILNQKAIEVAEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTI 173
Query: 508 RIRRIIAGTGVEIVFPIYSPNIKEIKVVNHRKVRRARLYYLRDKLPRFSTFK 353
RIRRIIAG GVEIVFPIYSPNIKEIKVV+HRKVRRARLYYLRDKLPR STFK
Sbjct: 174 RIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 225
>dbj|BAA97152.1| contains similarity to plastid ribosomal protein L19~gene_id:MQL5.4
[Arabidopsis thaliana]
Length = 286
Score = 227 bits (579), Expect = 2e-58
Identities = 134/219 (61%), Positives = 154/219 (70%), Gaps = 12/219 (5%)
Frame = -3
Query: 973 SPTKLGVSSCLGSRNFPLISSTSISWRCNNPLSAKPSFVVRADSNVDAASDN-------A 815
S LGVSS L P SS N+ LS F+ + SN A D+ A
Sbjct: 79 SSKNLGVSSIL-----PRASSV------NSRLSVSRVFLNHSSSNFGFAIDSKKRKEFIA 127
Query: 814 GEVPEAEGSVDQVPEDG---EAELASDSEV--EQPKPPRKQRVKLGDVMGILNQRAIEAS 650
EG + V E+ EAE ++ V E+ KPP K RVKLGD+MG+LN++AIE +
Sbjct: 128 KAEESTEGETEAVVENAVETEAEGEGEATVAAEEAKPPWKTRVKLGDIMGLLNKKAIEVA 187
Query: 649 ESMRPTPEIRTGDVVEIKLEVPENKRRLSIYKGIVISRQNAGIHTTIRIRRIIAGTGVEI 470
E++RP P +RTGD+VEIKLEVPENKRRLSIYKGIV+SRQNAGIHTTIRIRRIIAG GVEI
Sbjct: 188 ETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEI 247
Query: 469 VFPIYSPNIKEIKVVNHRKVRRARLYYLRDKLPRFSTFK 353
VFPIYSPNIKEIKVV+HRKVRRARLYYLRDKLPR STFK
Sbjct: 248 VFPIYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 286
>gb|AAM64533.1| contains similarity to plastid ribosomal protein L19 [Arabidopsis
thaliana]
Length = 229
Score = 227 bits (579), Expect = 2e-58
Identities = 134/219 (61%), Positives = 154/219 (70%), Gaps = 12/219 (5%)
Frame = -3
Query: 973 SPTKLGVSSCLGSRNFPLISSTSISWRCNNPLSAKPSFVVRADSNVDAASDN-------A 815
S LGVSS L P SS N+ LS F+ + SN A D+ A
Sbjct: 22 SSKNLGVSSIL-----PRASSV------NSRLSVSRVFLNHSSSNFGFAIDSKKRREFIA 70
Query: 814 GEVPEAEGSVDQVPEDG---EAELASDSEV--EQPKPPRKQRVKLGDVMGILNQRAIEAS 650
EG + V E+ EAE ++ V E+ KPP K RVKLGD+MG+LN++AIE +
Sbjct: 71 KAEESTEGETEAVVENAVETEAEGEGEATVAAEEAKPPWKTRVKLGDIMGLLNKKAIEVA 130
Query: 649 ESMRPTPEIRTGDVVEIKLEVPENKRRLSIYKGIVISRQNAGIHTTIRIRRIIAGTGVEI 470
E++RP P +RTGD+VEIKLEVPENKRRLSIYKGIV+SRQNAGIHTTIRIRRIIAG GVEI
Sbjct: 131 ETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEI 190
Query: 469 VFPIYSPNIKEIKVVNHRKVRRARLYYLRDKLPRFSTFK 353
VFPIYSPNIKEIKVV+HRKVRRARLYYLRDKLPR STFK
Sbjct: 191 VFPIYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 229
>ref|NP_568677.1| putative protein; protein id: At5g47190.1, supported by cDNA:
30034. [Arabidopsis thaliana] gi|19347900|gb|AAL85972.1|
unknown protein [Arabidopsis thaliana]
gi|21436235|gb|AAM51256.1| unknown protein [Arabidopsis
thaliana]
Length = 229
Score = 227 bits (579), Expect = 2e-58
Identities = 134/219 (61%), Positives = 154/219 (70%), Gaps = 12/219 (5%)
Frame = -3
Query: 973 SPTKLGVSSCLGSRNFPLISSTSISWRCNNPLSAKPSFVVRADSNVDAASDN-------A 815
S LGVSS L P SS N+ LS F+ + SN A D+ A
Sbjct: 22 SSKNLGVSSIL-----PRASSV------NSRLSVSRVFLNHSSSNFGFAIDSKKRKEFIA 70
Query: 814 GEVPEAEGSVDQVPEDG---EAELASDSEV--EQPKPPRKQRVKLGDVMGILNQRAIEAS 650
EG + V E+ EAE ++ V E+ KPP K RVKLGD+MG+LN++AIE +
Sbjct: 71 KAEESTEGETEAVVENAVETEAEGEGEATVAAEEAKPPWKTRVKLGDIMGLLNKKAIEVA 130
Query: 649 ESMRPTPEIRTGDVVEIKLEVPENKRRLSIYKGIVISRQNAGIHTTIRIRRIIAGTGVEI 470
E++RP P +RTGD+VEIKLEVPENKRRLSIYKGIV+SRQNAGIHTTIRIRRIIAG GVEI
Sbjct: 131 ETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEI 190
Query: 469 VFPIYSPNIKEIKVVNHRKVRRARLYYLRDKLPRFSTFK 353
VFPIYSPNIKEIKVV+HRKVRRARLYYLRDKLPR STFK
Sbjct: 191 VFPIYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 229
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 939,246,216
Number of Sequences: 1393205
Number of extensions: 21559930
Number of successful extensions: 73194
Number of sequences better than 10.0: 245
Number of HSP's better than 10.0 without gapping: 65230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72363
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 64016183864
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
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clone |
accession |
position |
| 1 |
MFB096c05_f |
BP040985 |
1 |
436 |
| 2 |
GNf044a11 |
BP070577 |
8 |
209 |
| 3 |
SPDL015d04_f |
BP052928 |
17 |
602 |
| 4 |
MFB028f09_f |
BP036060 |
30 |
485 |
| 5 |
MFB055f05_f |
BP038004 |
30 |
557 |
| 6 |
MFB100c03_f |
BP041247 |
34 |
287 |
| 7 |
MF083d07_f |
BP032680 |
36 |
573 |
| 8 |
MFB076b03_f |
BP039524 |
37 |
511 |
| 9 |
MFB023e08_f |
BP035666 |
39 |
527 |
| 10 |
SPD007f09_f |
BP044576 |
40 |
397 |
| 11 |
MFB007c07_f |
BP034402 |
63 |
606 |
| 12 |
MF012b05_f |
BP028848 |
63 |
577 |
| 13 |
GNf008h01 |
BP067985 |
126 |
571 |
| 14 |
MFB039g03_f |
BP036877 |
519 |
1077 |
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Lotus japonicus
Kazusa DNA Research Institute