KMC002955A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC002955A_C01 KMC002955A_c01
ctcgagtttttttttctttttttgtgttgGCGCCAAATAAATTTTTACTAGATTAACGTA
AAACACCATCATGTAAAGGAATCCAAAAGAGCTTTAAGCCACAAAAGAATGGTTCTACAT
CTTACATGATTGAAGAATCCCCAAATCAGAAATTCAGAGGCTTTATTTTAGCCCCTTAAA
ACTAAAGCAATTTCAGAATGAGGAATCACGTTGATATATCTCTCTACTCTAAGCCTAAAG
GCTAGAACTAACTTGAGAAACAATTTCCATTACCATCAACCACCAGTTCTTATCCTTTCA
CTGAGAATTGGTAGTAGCATGAAGAGATGTTTCGTCCTGCAGGACGTTTTCCATTGGATT
AGAGCCTTCAAAATGCTCTCTCTGGCCCTGTACATTGTTCAGAGTTGTTTTTCCCCAACC
GTTCCAAGAGTCCTCCTCCATTCTGGAGGATGATAACAAGCAGGTAGGTCTCAAGTCTCT
GAACTAATTCATACCACAGTGAAGGAAGCATCATCAGAGGGCATCAT


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC002955A_C01 KMC002955A_c01
         (527 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|ZP_00037254.1| hypothetical protein [Enterococcus faecium]          33  2.1
ref|NP_702226.1| hypothetical protein [Plasmodium falciparum 3D7...    31  7.9

>gb|ZP_00037254.1| hypothetical protein [Enterococcus faecium]
          Length = 223

 Score = 33.1 bits (74), Expect = 2.1
 Identities = 19/53 (35%), Positives = 29/53 (53%)
 Frame = +1

Query: 274 HQPPVLILSLRIGSSMKRCFVLQDVFHWIRAFKMLSLALYIVQSCFSPTVPRV 432
           +QP V   +++I +S+KRCFV        +A  +  L LY+ Q    PT PR+
Sbjct: 106 NQPVVKPNAMQINNSLKRCFV--------KALALHGLGLYVFQGEDIPTPPRI 150

>ref|NP_702226.1| hypothetical protein [Plasmodium falciparum 3D7]
           gi|23497406|gb|AAN36950.1|AE014821_37 hypothetical
           protein [Plasmodium falciparum 3D7]
          Length = 1788

 Score = 31.2 bits (69), Expect = 7.9
 Identities = 12/39 (30%), Positives = 22/39 (55%)
 Frame = -3

Query: 411 KTTLNNVQGQREHFEGSNPMENVLQDETSLHATTNSQ*K 295
           KT LN+   +  H E  N M+N++++E+  +   N + K
Sbjct: 89  KTMLNSTYNKCTHLENKNEMDNIIEEESEYNIINNDEGK 127

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 441,723,579
Number of Sequences: 1393205
Number of extensions: 8893823
Number of successful extensions: 17061
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17058
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 GNf008e08 BP067964 1 495
2 MR054g08_f BP080191 16 405
3 MFB067c05_f BP038851 75 487
4 MFB062e09_f BP038511 78 530




Lotus japonicus
Kazusa DNA Research Institute