Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002955A_C01 KMC002955A_c01
(527 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ZP_00037254.1| hypothetical protein [Enterococcus faecium] 33 2.1
ref|NP_702226.1| hypothetical protein [Plasmodium falciparum 3D7... 31 7.9
>gb|ZP_00037254.1| hypothetical protein [Enterococcus faecium]
Length = 223
Score = 33.1 bits (74), Expect = 2.1
Identities = 19/53 (35%), Positives = 29/53 (53%)
Frame = +1
Query: 274 HQPPVLILSLRIGSSMKRCFVLQDVFHWIRAFKMLSLALYIVQSCFSPTVPRV 432
+QP V +++I +S+KRCFV +A + L LY+ Q PT PR+
Sbjct: 106 NQPVVKPNAMQINNSLKRCFV--------KALALHGLGLYVFQGEDIPTPPRI 150
>ref|NP_702226.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497406|gb|AAN36950.1|AE014821_37 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 1788
Score = 31.2 bits (69), Expect = 7.9
Identities = 12/39 (30%), Positives = 22/39 (55%)
Frame = -3
Query: 411 KTTLNNVQGQREHFEGSNPMENVLQDETSLHATTNSQ*K 295
KT LN+ + H E N M+N++++E+ + N + K
Sbjct: 89 KTMLNSTYNKCTHLENKNEMDNIIEEESEYNIINNDEGK 127
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 441,723,579
Number of Sequences: 1393205
Number of extensions: 8893823
Number of successful extensions: 17061
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17058
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)