Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002954A_C01 KMC002954A_c01
(497 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_214591.1| hypothetical protein Rv0077c [Mycobacterium tub... 31 8.8
ref|NP_334493.1| hydrolase, alpha/beta hydrolase fold family [My... 31 8.8
>ref|NP_214591.1| hypothetical protein Rv0077c [Mycobacterium tuberculosis H37Rv]
gi|7478514|pir||F70849 probable oxidoreductase -
Mycobacterium tuberculosis (strain H37RV)
gi|2808734|emb|CAA16258.1| hypothetical protein Rv0077c
[Mycobacterium tuberculosis H37Rv]
Length = 276
Score = 30.8 bits (68), Expect = 8.8
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 142 HGSNLGSKLIRNITHYISGSWV-CIRKTWQKGSRPSHIQP 258
HG +G +L R ++ ++G + CI TW G+ P ++P
Sbjct: 28 HGYMMGGQLWRRVSERLAGRGLRCIAPTWPLGAHPKPLRP 67
>ref|NP_334493.1| hydrolase, alpha/beta hydrolase fold family [Mycobacterium
tuberculosis CDC1551] gi|13879130|gb|AAK44307.1|
hydrolase, alpha/beta hydrolase fold family
[Mycobacterium tuberculosis CDC1551]
Length = 284
Score = 30.8 bits (68), Expect = 8.8
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 142 HGSNLGSKLIRNITHYISGSWV-CIRKTWQKGSRPSHIQP 258
HG +G +L R ++ ++G + CI TW G+ P ++P
Sbjct: 36 HGYMMGGQLWRRVSERLAGRGLRCIAPTWPLGAHPKPLRP 75
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 429,357,534
Number of Sequences: 1393205
Number of extensions: 8953290
Number of successful extensions: 25581
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25578
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14783057727
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
