Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002953A_C01 KMC002953A_c01
(409 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_701337.1| hypothetical protein [Plasmodium falciparum 3D7... 34 0.49
ref|NP_571333.1| opioid receptor, delta 1; opioid receptor homol... 31 3.2
ref|NP_503736.1| Predicted CDS, putative plasma membrane membran... 31 3.2
gb|EAA39726.1| GLP_14_5908_12108 [Giardia lamblia ATCC 50803] 31 4.2
gb|EAA41909.1| GLP_39_27614_25452 [Giardia lamblia ATCC 50803] 31 4.2
>ref|NP_701337.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496405|gb|AAN36061.1|AE014843_25 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 2755
Score = 33.9 bits (76), Expect = 0.49
Identities = 17/48 (35%), Positives = 26/48 (53%)
Frame = +1
Query: 25 INRIHMKQMFESKHNPKKDPHPSTKRDLAKHDHENYRRKTYQINEELK 168
I ++ ++ KHN +K +P K DL K+DHENY + N +K
Sbjct: 364 IKNCNVNRIMCLKHNNEKLKYPFGKVDLKKNDHENYYKNYVNGNYNVK 411
>ref|NP_571333.1| opioid receptor, delta 1; opioid receptor homolog [Danio rerio]
gi|7441620|pir||JE0087 delta opioid receptor - Zebrafish
gi|2739231|emb|CAA04862.1| opioid receptor homologue
[Danio rerio]
Length = 373
Score = 31.2 bits (69), Expect = 3.2
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +1
Query: 139 KTYQINEELKASALSLCIWVHGRAAPLSIVIWSLPYLNNQNLIYRYCLLPVP 294
+ + +KA +++CIW+ A + I+I ++ + NQN C+L P
Sbjct: 158 RALEFRTPIKAKIINVCIWILSSAVGVPIMIMAVTRVTNQNT--TVCMLKFP 207
>ref|NP_503736.1| Predicted CDS, putative plasma membrane membrane protein family
member, with at least 5 transmembrane domains, nematode
specific [Caenorhabditis elegans] gi|7496388|pir||T33259
hypothetical protein C24B9.2 - Caenorhabditis elegans
gi|3193243|gb|AAC19253.1| Hypothetical protein C24B9.2
[Caenorhabditis elegans]
Length = 309
Score = 31.2 bits (69), Expect = 3.2
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Frame = -2
Query: 225 Y*EWSSTP-VHPNTQGESRSLQFFINLISFSSV-----IFMVMLG*ISFSTWVWIL 76
Y W P + PN E R+L FF+N++ +++V M+++G +F ++ IL
Sbjct: 159 YYAWFYDPFIFPNMTSEVRNLDFFLNMLKYTNVPHGVNNVMIIIGTSTFYAYICIL 214
>gb|EAA39726.1| GLP_14_5908_12108 [Giardia lamblia ATCC 50803]
Length = 2066
Score = 30.8 bits (68), Expect = 4.2
Identities = 14/55 (25%), Positives = 31/55 (55%), Gaps = 3/55 (5%)
Frame = +1
Query: 226 VIWSLPYLNNQNLIYRYCLLP---VPVTFSFSFSRDIFQPTKRPRVASPWVQVLS 381
++ S PY+ N NL+ + + +P+T S+D+ ++P+ +S W ++L+
Sbjct: 1346 IVISSPYIKNSNLLVDHQGMADDVLPITGPLDLSKDMSVSHRQPKKSSKWDEILA 1400
>gb|EAA41909.1| GLP_39_27614_25452 [Giardia lamblia ATCC 50803]
Length = 720
Score = 30.8 bits (68), Expect = 4.2
Identities = 20/60 (33%), Positives = 30/60 (49%), Gaps = 1/60 (1%)
Frame = +1
Query: 70 PKKDPHPSTKRDLAKHDH-ENYRRKTYQINEELKASALSLCIWVHGRAAPLSIVIWSLPY 246
P + + + +L+K H +N RRK Q+ + LKA A H A LS + S+PY
Sbjct: 105 PGPSQYTNIQPNLSKAGHTDNIRRKKIQLQKSLKAKA------EHRHNADLSAAVQSIPY 158
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 366,198,282
Number of Sequences: 1393205
Number of extensions: 7793280
Number of successful extensions: 19595
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 18847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19575
length of database: 448,689,247
effective HSP length: 111
effective length of database: 294,043,492
effective search space used: 7057043808
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
