Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002950A_C01 KMC002950A_c01
(721 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190864.1| peroxiredoxin - like protein; protein id: At3g5... 177 1e-43
gb|AAK92817.1| putative peroxiredoxin protein [Arabidopsis thali... 176 3e-43
dbj|BAA82377.1| ESTs AU070372(S13446),AU075541(S0353) correspond... 170 2e-41
ref|NP_422188.1| AhpC/TSA family protein [Caulobacter crescentus... 133 2e-30
gb|AAL35363.2|AF442385_1 thioredoxin peroxidase [Capsicum annuum] 132 5e-30
>ref|NP_190864.1| peroxiredoxin - like protein; protein id: At3g52960.1, supported by
cDNA: gi_15292892, supported by cDNA: gi_15451115,
supported by cDNA: gi_18377483 [Arabidopsis thaliana]
gi|11358610|pir||T47553 peroxiredoxin-like protein -
Arabidopsis thaliana gi|7529720|emb|CAB86900.1|
peroxiredoxin-like protein [Arabidopsis thaliana]
gi|15451116|gb|AAK96829.1| peroxiredoxin-like protein
[Arabidopsis thaliana] gi|18377484|gb|AAL66908.1|
peroxiredoxin-like protein [Arabidopsis thaliana]
gi|23297326|gb|AAN12942.1| putative peroxiredoxin
[Arabidopsis thaliana]
Length = 234
Score = 177 bits (449), Expect = 1e-43
Identities = 84/115 (73%), Positives = 101/115 (87%)
Frame = -1
Query: 721 TCSQKHVPGLVEKSAELKAKGVDTIACLSVNDAFVMKAWKEDLKLKDEVLLLSDGNGDFT 542
TCSQKHVPG V K+ EL++KG+D IAC+SVNDAFVM+AW++DL + DEV+LLSDGNG+FT
Sbjct: 120 TCSQKHVPGFVSKAGELRSKGIDVIACISVNDAFVMEAWRKDLGINDEVMLLSDGNGEFT 179
Query: 541 RAIGSELDLSDKPVGLGVRSRRYAILAEDGVVKLFHLEEGGAFTFSGADDILKLL 377
+G ELDL DKPVGLGVRSRRYAILA+DGVVK+ +LEEGGAFT S A+D+LK L
Sbjct: 180 GKLGVELDLRDKPVGLGVRSRRYAILADDGVVKVLNLEEGGAFTNSSAEDMLKAL 234
>gb|AAK92817.1| putative peroxiredoxin protein [Arabidopsis thaliana]
Length = 234
Score = 176 bits (446), Expect = 3e-43
Identities = 84/115 (73%), Positives = 100/115 (86%)
Frame = -1
Query: 721 TCSQKHVPGLVEKSAELKAKGVDTIACLSVNDAFVMKAWKEDLKLKDEVLLLSDGNGDFT 542
TCSQKHVPG V K EL++KG+D IAC+SVNDAFVM+AW++DL + DEV+LLSDGNG+FT
Sbjct: 120 TCSQKHVPGFVSKVGELRSKGIDVIACISVNDAFVMEAWRKDLGINDEVMLLSDGNGEFT 179
Query: 541 RAIGSELDLSDKPVGLGVRSRRYAILAEDGVVKLFHLEEGGAFTFSGADDILKLL 377
+G ELDL DKPVGLGVRSRRYAILA+DGVVK+ +LEEGGAFT S A+D+LK L
Sbjct: 180 GKLGVELDLRDKPVGLGVRSRRYAILADDGVVKVLNLEEGGAFTNSSAEDMLKAL 234
>dbj|BAA82377.1| ESTs AU070372(S13446),AU075541(S0353) correspond to a region of the
predicted gene.~Similar to Arabidopsis thaliana BAC
genomic sequence. (AC002292) [Oryza sativa (japonica
cultivar-group)]
Length = 225
Score = 170 bits (430), Expect = 2e-41
Identities = 84/116 (72%), Positives = 101/116 (86%), Gaps = 1/116 (0%)
Frame = -1
Query: 721 TCSQKHVPGLVEKSAELKAKGVDTIACLSVNDAFVMKAWKEDLKLKD-EVLLLSDGNGDF 545
TCSQKH+PG +EK+ EL AKGVD IAC+SVNDAFVM+AWKE L L D +VLLLSDGN +
Sbjct: 110 TCSQKHLPGFIEKAGELHAKGVDAIACVSVNDAFVMRAWKESLGLGDADVLLLSDGNLEL 169
Query: 544 TRAIGSELDLSDKPVGLGVRSRRYAILAEDGVVKLFHLEEGGAFTFSGADDILKLL 377
TRA+G E+DLSDKP+GLGVRSRRYA+LA+DGVVK+ +LEEGGAFT S A+++LK L
Sbjct: 170 TRALGVEMDLSDKPMGLGVRSRRYALLADDGVVKVLNLEEGGAFTTSSAEEMLKAL 225
>ref|NP_422188.1| AhpC/TSA family protein [Caulobacter crescentus CB15]
gi|25347412|pir||H87669 AhpC/TSA family protein
[imported] - Caulobacter crescentus
gi|13425104|gb|AAK25356.1| AhpC/TSA family protein
[Caulobacter crescentus CB15]
Length = 160
Score = 133 bits (335), Expect = 2e-30
Identities = 65/115 (56%), Positives = 85/115 (73%)
Frame = -1
Query: 721 TCSQKHVPGLVEKSAELKAKGVDTIACLSVNDAFVMKAWKEDLKLKDEVLLLSDGNGDFT 542
TCS KH+PG EK+ ELKAKGVD+I C+SVND FVMKAW +D + EVLL++DGNGDFT
Sbjct: 48 TCSAKHLPGFKEKADELKAKGVDSIVCVSVNDVFVMKAWGKDQGIDGEVLLIADGNGDFT 107
Query: 541 RAIGSELDLSDKPVGLGVRSRRYAILAEDGVVKLFHLEEGGAFTFSGADDILKLL 377
+AIG LD G+G RS+RY+++A+DGVV H+E+ G F S A+ +L+ L
Sbjct: 108 KAIG--LDFDGSKFGMGARSQRYSLVAKDGVVTQLHVEDAGQFKVSSAEYLLEQL 160
>gb|AAL35363.2|AF442385_1 thioredoxin peroxidase [Capsicum annuum]
Length = 162
Score = 132 bits (332), Expect = 5e-30
Identities = 68/115 (59%), Positives = 84/115 (72%)
Frame = -1
Query: 721 TCSQKHVPGLVEKSAELKAKGVDTIACLSVNDAFVMKAWKEDLKLKDEVLLLSDGNGDFT 542
TCS KHVPG +EK+ LK+KGV+ I C+SVND FVMKAW + V L+DG G +T
Sbjct: 50 TCSTKHVPGFIEKADLLKSKGVEEILCVSVNDPFVMKAWAKTFPENKHVKFLADGAGKYT 109
Query: 541 RAIGSELDLSDKPVGLGVRSRRYAILAEDGVVKLFHLEEGGAFTFSGADDILKLL 377
A+G ELDLS+K GLGVRSRRYA+L +D VK+ ++E GG FT SGAD+ILK L
Sbjct: 110 HALGLELDLSEK--GLGVRSRRYALLVDDLKVKVANVESGGEFTVSGADEILKAL 162
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 651,083,042
Number of Sequences: 1393205
Number of extensions: 14978765
Number of successful extensions: 54620
Number of sequences better than 10.0: 199
Number of HSP's better than 10.0 without gapping: 49735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54175
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33499052993
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
