Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002948A_C01 KMC002948A_c01
(589 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_178238.1| putative ribose 5-phosphate isomerase; protein ... 97 1e-19
gb|AAM64621.1| putative ribose 5-phosphate isomerase [Arabidopsi... 90 2e-17
ref|NP_177266.1| putative ribose 5-phosphate isomerase; protein ... 87 2e-16
gb|AAK26040.1|AF360330_1 putative ribose 5-phosphate isomerase [... 85 6e-16
gb|AAL77589.1|L43068_1 ribose-5-phosphate isomerase [Spinacia ol... 75 5e-13
>ref|NP_178238.1| putative ribose 5-phosphate isomerase; protein id: At2g01290.1,
supported by cDNA: gi_15809809, supported by cDNA:
gi_17978866 [Arabidopsis thaliana]
gi|6226027|sp|Q9ZU38|RPIA_ARATH Probable ribose
5-phosphate isomerase (Phosphoriboisomerase)
gi|25329401|pir||H84422 probable ribose 5-phosphate
isomerase [imported] - Arabidopsis thaliana
gi|4262236|gb|AAD14529.1| putative ribose 5-phosphate
isomerase [Arabidopsis thaliana]
gi|15809810|gb|AAL06833.1| At2g01290/F10A8.17
[Arabidopsis thaliana] gi|17978867|gb|AAL47405.1|
At2g01290/F10A8.17 [Arabidopsis thaliana]
Length = 265
Score = 97.4 bits (241), Expect = 1e-19
Identities = 45/67 (67%), Positives = 59/67 (87%)
Frame = -3
Query: 578 VGEKEEPFLTDHGNYIVDLYFKESIGDLKAASDSILQIAGVVEHGMFLDMATTVIIAGEL 399
+GEK + F+TD+GNYIVD++ +E +GDL A SD+IL++ GVVEHGMFLDMA+TVIIAGEL
Sbjct: 198 LGEKGKAFVTDNGNYIVDMHVEEDMGDLGAVSDAILRLPGVVEHGMFLDMASTVIIAGEL 257
Query: 398 GLTVKNK 378
G+ +KNK
Sbjct: 258 GVKIKNK 264
>gb|AAM64621.1| putative ribose 5-phosphate isomerase [Arabidopsis thaliana]
Length = 267
Score = 89.7 bits (221), Expect = 2e-17
Identities = 40/66 (60%), Positives = 55/66 (82%)
Frame = -3
Query: 575 GEKEEPFLTDHGNYIVDLYFKESIGDLKAASDSILQIAGVVEHGMFLDMATTVIIAGELG 396
GE+ P +TD+GNY+VDLY + IGDL+ AS++IL+ GVVEHGMFL MATT+I+AG+ G
Sbjct: 200 GEEAAPAVTDNGNYVVDLYLERDIGDLEVASEAILRFPGVVEHGMFLGMATTLIVAGKFG 259
Query: 395 LTVKNK 378
+TVK++
Sbjct: 260 VTVKDR 265
>ref|NP_177266.1| putative ribose 5-phosphate isomerase; protein id: At1g71100.1,
supported by cDNA: 3116., supported by cDNA: gi_13430835
[Arabidopsis thaliana] gi|25329397|pir||E96735
hypothetical protein F23N20.9 [imported] - Arabidopsis
thaliana gi|12323421|gb|AAG51684.1|AC016972_3 putative
ribose 5-phosphate isomerase; 39482-40285 [Arabidopsis
thaliana] gi|23297110|gb|AAN13095.1| putative ribose
5-phosphate isomerase [Arabidopsis thaliana]
Length = 267
Score = 86.7 bits (213), Expect = 2e-16
Identities = 39/66 (59%), Positives = 54/66 (81%)
Frame = -3
Query: 575 GEKEEPFLTDHGNYIVDLYFKESIGDLKAASDSILQIAGVVEHGMFLDMATTVIIAGELG 396
GE+ P +TD+ NY+VDLY + IGDL+ AS++IL+ GVVEHGMFL MATT+I+AG+ G
Sbjct: 200 GEEAAPAVTDNRNYVVDLYLERDIGDLEVASEAILRFPGVVEHGMFLGMATTLIVAGKFG 259
Query: 395 LTVKNK 378
+TVK++
Sbjct: 260 VTVKDR 265
>gb|AAK26040.1|AF360330_1 putative ribose 5-phosphate isomerase [Arabidopsis thaliana]
Length = 267
Score = 85.1 bits (209), Expect = 6e-16
Identities = 38/66 (57%), Positives = 54/66 (81%)
Frame = -3
Query: 575 GEKEEPFLTDHGNYIVDLYFKESIGDLKAASDSILQIAGVVEHGMFLDMATTVIIAGELG 396
GE+ P +TD+ NY+VDLY + IGDL+ AS++IL+ GVV+HGMFL MATT+I+AG+ G
Sbjct: 200 GEEAAPAVTDNRNYVVDLYLERDIGDLEVASEAILRFPGVVKHGMFLGMATTLIVAGKFG 259
Query: 395 LTVKNK 378
+TVK++
Sbjct: 260 VTVKDR 265
>gb|AAL77589.1|L43068_1 ribose-5-phosphate isomerase [Spinacia oleracea]
Length = 289
Score = 75.5 bits (184), Expect = 5e-13
Identities = 39/70 (55%), Positives = 50/70 (70%)
Frame = -3
Query: 587 LRTVGEKEEPFLTDHGNYIVDLYFKESIGDLKAASDSILQIAGVVEHGMFLDMATTVIIA 408
LR G+ P++TD+ NYIVDLYF SI D +AA I + GVVEHG+FL MA+ VIIA
Sbjct: 221 LRMEGDSS-PYVTDNSNYIVDLYFPTSIKDAEAAGREISALEGVVEHGLFLGMASEVIIA 279
Query: 407 GELGLTVKNK 378
G+ G++VK K
Sbjct: 280 GKTGVSVKTK 289
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 480,066,226
Number of Sequences: 1393205
Number of extensions: 10048602
Number of successful extensions: 27589
Number of sequences better than 10.0: 122
Number of HSP's better than 10.0 without gapping: 24892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27345
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
