Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002945A_C01 KMC002945A_c01
(486 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC15791.1| P0466H10.24 [Oryza sativa (japonica cultivar-gro... 131 5e-30
ref|NP_566369.1| expressed protein; protein id: At3g10210.1, sup... 127 5e-29
gb|AAM65664.1| unknown [Arabidopsis thaliana] 127 5e-29
ref|NP_195300.1| putative protein; protein id: At4g35750.1, supp... 75 5e-13
gb|AAM62910.1| unknown [Arabidopsis thaliana] 74 1e-12
>dbj|BAC15791.1| P0466H10.24 [Oryza sativa (japonica cultivar-group)]
Length = 272
Score = 131 bits (329), Expect = 5e-30
Identities = 57/77 (74%), Positives = 64/77 (83%)
Frame = -2
Query: 485 SGGLYWKIKYVSRLQYLWDDIKKGEIEIPDFVRKHDDILEHRPLTDYGIEPDPFHLTGMP 306
SGGLYWKIKYVSRL+YLW DI+KGE+EIPDFV HD ILEHRPLTDYGIEPDP HL MP
Sbjct: 188 SGGLYWKIKYVSRLEYLWGDIRKGEVEIPDFVIDHDKILEHRPLTDYGIEPDPLHLADMP 247
Query: 305 SLTPSFGKYEDRWGARD 255
++ S G+YED+W D
Sbjct: 248 AVGYSLGRYEDKWSPED 264
>ref|NP_566369.1| expressed protein; protein id: At3g10210.1, supported by cDNA:
4147., supported by cDNA: gi_15809947, supported by
cDNA: gi_18958049 [Arabidopsis thaliana]
gi|6056204|gb|AAF02821.1|AC009400_17 hypothetical
protein [Arabidopsis thaliana]
gi|15809948|gb|AAL06901.1| AT3g10210/F14P13_19
[Arabidopsis thaliana] gi|18958050|gb|AAL79598.1|
AT3g10210/F14P13_19 [Arabidopsis thaliana]
Length = 237
Score = 127 bits (320), Expect = 5e-29
Identities = 55/73 (75%), Positives = 65/73 (88%)
Frame = -2
Query: 485 SGGLYWKIKYVSRLQYLWDDIKKGEIEIPDFVRKHDDILEHRPLTDYGIEPDPFHLTGMP 306
SGGLYWKIKYVSRLQYLW+DIKKGE+EIPDFV+ HD++LEHRPLTDYGIEPDPF L+ +
Sbjct: 163 SGGLYWKIKYVSRLQYLWEDIKKGEVEIPDFVKNHDNVLEHRPLTDYGIEPDPFQLSEVQ 222
Query: 305 SLTPSFGKYEDRW 267
S + S +YE+RW
Sbjct: 223 SSSFSLNRYENRW 235
>gb|AAM65664.1| unknown [Arabidopsis thaliana]
Length = 237
Score = 127 bits (320), Expect = 5e-29
Identities = 55/73 (75%), Positives = 65/73 (88%)
Frame = -2
Query: 485 SGGLYWKIKYVSRLQYLWDDIKKGEIEIPDFVRKHDDILEHRPLTDYGIEPDPFHLTGMP 306
SGGLYWKIKYVSRLQYLW+DIKKGE+EIPDFV+ HD++LEHRPLTDYGIEPDPF L+ +
Sbjct: 163 SGGLYWKIKYVSRLQYLWEDIKKGEVEIPDFVKNHDNVLEHRPLTDYGIEPDPFQLSEVQ 222
Query: 305 SLTPSFGKYEDRW 267
S + S +YE+RW
Sbjct: 223 SSSFSLNRYENRW 235
>ref|NP_195300.1| putative protein; protein id: At4g35750.1, supported by cDNA:
17117., supported by cDNA: gi_17473777 [Arabidopsis
thaliana] gi|7459614|pir||T04685 hypothetical protein
F4B14.20 - Arabidopsis thaliana
gi|3367593|emb|CAA20045.1| putative protein [Arabidopsis
thaliana] gi|7270527|emb|CAB81484.1| putative protein
[Arabidopsis thaliana] gi|17473778|gb|AAL38324.1|
putative protein [Arabidopsis thaliana]
Length = 202
Score = 74.7 bits (182), Expect = 5e-13
Identities = 30/52 (57%), Positives = 42/52 (80%)
Frame = -2
Query: 485 SGGLYWKIKYVSRLQYLWDDIKKGEIEIPDFVRKHDDILEHRPLTDYGIEPD 330
SGGLY K++Y+SR+ YLW+ +++ EIE+P+FV HDD LE+RP+ DYG E D
Sbjct: 128 SGGLYGKLRYISRVDYLWEHVRRNEIEMPEFVYDHDDDLEYRPMMDYGQESD 179
>gb|AAM62910.1| unknown [Arabidopsis thaliana]
Length = 202
Score = 73.6 bits (179), Expect = 1e-12
Identities = 30/52 (57%), Positives = 41/52 (78%)
Frame = -2
Query: 485 SGGLYWKIKYVSRLQYLWDDIKKGEIEIPDFVRKHDDILEHRPLTDYGIEPD 330
SGGLY K+ Y+SR+ YLW+ +++ EIE+P+FV HDD LE+RP+ DYG E D
Sbjct: 128 SGGLYGKLTYISRVDYLWEHVRRNEIEMPEFVYDHDDDLEYRPMMDYGQESD 179
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 411,090,115
Number of Sequences: 1393205
Number of extensions: 8250811
Number of successful extensions: 19832
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 19287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19831
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13980339936
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
