Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002943A_C02 KMC002943A_c02
(611 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA06645.1| agCP13363 [Anopheles gambiae str. PEST] 35 1.0
ref|NP_704327.1| hypothetical protein [Plasmodium falciparum 3D7... 33 2.2
emb|CAD62400.1| ammonia monooxygenase [uncultured soil bacterium] 32 6.5
gb|EAA39006.1| GLP_542_24404_26422 [Giardia lamblia ATCC 50803] 32 8.5
gb|EAA22539.1| hypothetical protein [Plasmodium yoelii yoelii] 32 8.5
>gb|EAA06645.1| agCP13363 [Anopheles gambiae str. PEST]
Length = 80
Score = 34.7 bits (78), Expect = 1.0
Identities = 21/65 (32%), Positives = 31/65 (47%)
Frame = +1
Query: 394 PFHYTNIRSEIVHSKVNRLSIRSLSSLWYPSTVATWIVDLCPMGIGHRLQHTPTCHNRHS 573
PF T R + HS +R+ +RS +W+ + I+DL P G R + T R +
Sbjct: 7 PFRRTCTRVSLKHSFWSRVCVRSCVCVWFTNCSLALIIDLFPDGKRSRFRFTFPHRIRSA 66
Query: 574 KP*TA 588
P TA
Sbjct: 67 PPATA 71
>ref|NP_704327.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23499066|emb|CAD51146.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 93
Score = 33.5 bits (75), Expect = 2.2
Identities = 18/40 (45%), Positives = 27/40 (67%)
Frame = +2
Query: 113 ERHYNLKSRKKNNKKINK*KKVPNSYLVNLCSWL*GIMQI 232
++H+ LK +KK +KI K KK+ SY+++L WL GI I
Sbjct: 3 DKHFILKKKKKKKEKIEKKKKI-RSYIIDL-FWLHGITYI 40
>emb|CAD62400.1| ammonia monooxygenase [uncultured soil bacterium]
Length = 225
Score = 32.0 bits (71), Expect = 6.5
Identities = 17/46 (36%), Positives = 23/46 (49%)
Frame = -2
Query: 436 YCARSLSECWCNGKVRLGLSLCIRCLLGFQRLRRSKCSIVLSSHPL 299
YCA + W N ++ G +LCI CLL + L R S HP+
Sbjct: 25 YCATIMYYLWVNYRLPFGATLCIVCLLTGEWLTRFWGFYWWSHHPI 70
>gb|EAA39006.1| GLP_542_24404_26422 [Giardia lamblia ATCC 50803]
Length = 672
Score = 31.6 bits (70), Expect = 8.5
Identities = 18/55 (32%), Positives = 31/55 (55%), Gaps = 4/55 (7%)
Frame = +1
Query: 259 HIPLSQYIIR*VESVGGLTVLLSTSNAAVFGIPGGI*YTTT----SQVSPFHYTN 411
H L+ +++ V+++G L +TS+ + F PG YTT+ S VSP +T+
Sbjct: 174 HTKLTAHLLHKVKTLGDRATLAATSSKSPFTSPGAKQYTTSVNRFSNVSPSQHTD 228
>gb|EAA22539.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 2232
Score = 31.6 bits (70), Expect = 8.5
Identities = 14/46 (30%), Positives = 25/46 (53%)
Frame = +2
Query: 56 EEDNKKELYIQVMMDVMDEERHYNLKSRKKNNKKINK*KKVPNSYL 193
+ +N K L++ D ++E+R+YN NK INK ++ +L
Sbjct: 1416 DNENDKILFVTEESDSINEDRYYNKLKYSNTNKNINKLEEKERKFL 1461
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 536,779,507
Number of Sequences: 1393205
Number of extensions: 11559715
Number of successful extensions: 32198
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 30385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32042
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
