Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002942A_C01 KMC002942A_c01
(328 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA74860.1| KIAA0837 protein [Homo sapiens] 33 1.2
gb|AAD17853.1| long chain fatty acyl CoA synthetase 2 [Homo sapi... 33 1.2
gb|AAH47453.1| Similar to fatty-acid-Coenzyme A ligase, long-cha... 33 1.2
sp|Q9UKU0|LCFF_HUMAN Long-chain-fatty-acid--CoA ligase 6 (Long-c... 33 1.2
ref|NP_056071.1| fatty-acid-Coenzyme A ligase, long-chain 6; lon... 33 1.2
>dbj|BAA74860.1| KIAA0837 protein [Homo sapiens]
Length = 745
Score = 32.7 bits (73), Expect = 1.2
Identities = 17/41 (41%), Positives = 26/41 (62%), Gaps = 3/41 (7%)
Frame = +2
Query: 113 YHTVNCNLYSTLGPGLVVYIMN---LSSVILHRPCSASMVM 226
Y V LY TLGPG + YI+N +S+VI+ +P A +++
Sbjct: 218 YSMVVVPLYDTLGPGAIRYIINTADISTVIVDKPQKAVLLL 258
>gb|AAD17853.1| long chain fatty acyl CoA synthetase 2 [Homo sapiens]
Length = 667
Score = 32.7 bits (73), Expect = 1.2
Identities = 17/41 (41%), Positives = 26/41 (62%), Gaps = 3/41 (7%)
Frame = +2
Query: 113 YHTVNCNLYSTLGPGLVVYIMN---LSSVILHRPCSASMVM 226
Y V LY TLGPG + YI+N +S+VI+ +P A +++
Sbjct: 170 YSMVVVPLYDTLGPGAIRYIINTADISTVIVDKPQKAVLLL 210
>gb|AAH47453.1| Similar to fatty-acid-Coenzyme A ligase, long-chain 6 [Homo
sapiens]
Length = 622
Score = 32.7 bits (73), Expect = 1.2
Identities = 17/41 (41%), Positives = 26/41 (62%), Gaps = 3/41 (7%)
Frame = +2
Query: 113 YHTVNCNLYSTLGPGLVVYIMN---LSSVILHRPCSASMVM 226
Y V LY TLGPG + YI+N +S+VI+ +P A +++
Sbjct: 135 YSMVVVPLYDTLGPGAIRYIINTADISTVIVDKPQKAVLLL 175
>sp|Q9UKU0|LCFF_HUMAN Long-chain-fatty-acid--CoA ligase 6 (Long-chain acyl-CoA synthetase
6) (LACS 6)
Length = 697
Score = 32.7 bits (73), Expect = 1.2
Identities = 17/41 (41%), Positives = 26/41 (62%), Gaps = 3/41 (7%)
Frame = +2
Query: 113 YHTVNCNLYSTLGPGLVVYIMN---LSSVILHRPCSASMVM 226
Y V LY TLGPG + YI+N +S+VI+ +P A +++
Sbjct: 170 YSMVVVPLYDTLGPGAIRYIINTADISTVIVDKPQKAVLLL 210
>ref|NP_056071.1| fatty-acid-Coenzyme A ligase, long-chain 6; long fatty acyl-CoA
synthetase 2 [Homo sapiens]
gi|5702202|gb|AAD47199.1|AF129166_1 long-chain acyl-CoA
synthetase 5 [Homo sapiens]
Length = 697
Score = 32.7 bits (73), Expect = 1.2
Identities = 17/41 (41%), Positives = 26/41 (62%), Gaps = 3/41 (7%)
Frame = +2
Query: 113 YHTVNCNLYSTLGPGLVVYIMN---LSSVILHRPCSASMVM 226
Y V LY TLGPG + YI+N +S+VI+ +P A +++
Sbjct: 170 YSMVVVPLYDTLGPGAIRYIINTADISTVIVDKPQKAVLLL 210
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 235,815,229
Number of Sequences: 1393205
Number of extensions: 3913739
Number of successful extensions: 6788
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 6679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6788
length of database: 448,689,247
effective HSP length: 84
effective length of database: 331,660,027
effective search space used: 7959840648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
