Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002941A_C01 KMC002941A_c01
(741 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191639.2| putative protein; protein id: At3g60800.1, supp... 80 3e-14
pir||T47891 hypothetical protein T4C21.210 - Arabidopsis thalian... 80 3e-14
ref|NP_567668.1| Expressed protein; protein id: At4g22750.1, sup... 55 1e-06
gb|AAM65313.1| unknown [Arabidopsis thaliana] 55 1e-06
pir||T04570 hypothetical protein T12H17.140 - Arabidopsis thalia... 55 1e-06
>ref|NP_191639.2| putative protein; protein id: At3g60800.1, supported by cDNA:
gi_20466004 [Arabidopsis thaliana]
gi|17979303|gb|AAL49877.1| unknown protein [Arabidopsis
thaliana] gi|20466005|gb|AAM20224.1| unknown protein
[Arabidopsis thaliana]
Length = 307
Score = 80.1 bits (196), Expect = 3e-14
Identities = 35/41 (85%), Positives = 37/41 (89%)
Frame = -1
Query: 741 EQVFGMDKIYWFIPAYSEEDIRRMPALQGLEYPSKPDFDSQ 619
EQVFGMDK YW IP Y+EED+RRMP LQGLEYPSKPDFDSQ
Sbjct: 267 EQVFGMDKRYWLIPGYTEEDLRRMPELQGLEYPSKPDFDSQ 307
>pir||T47891 hypothetical protein T4C21.210 - Arabidopsis thaliana
gi|7329690|emb|CAB82684.1| putative protein [Arabidopsis
thaliana]
Length = 273
Score = 80.1 bits (196), Expect = 3e-14
Identities = 35/41 (85%), Positives = 37/41 (89%)
Frame = -1
Query: 741 EQVFGMDKIYWFIPAYSEEDIRRMPALQGLEYPSKPDFDSQ 619
EQVFGMDK YW IP Y+EED+RRMP LQGLEYPSKPDFDSQ
Sbjct: 233 EQVFGMDKRYWLIPGYTEEDLRRMPELQGLEYPSKPDFDSQ 273
>ref|NP_567668.1| Expressed protein; protein id: At4g22750.1, supported by cDNA:
38360., supported by cDNA: gi_14334549, supported by
cDNA: gi_17065617 [Arabidopsis thaliana]
gi|14334550|gb|AAK59683.1| unknown protein [Arabidopsis
thaliana] gi|17065618|gb|AAL33803.1| unknown protein
[Arabidopsis thaliana]
Length = 302
Score = 55.1 bits (131), Expect = 1e-06
Identities = 20/41 (48%), Positives = 34/41 (82%)
Frame = -1
Query: 741 EQVFGMDKIYWFIPAYSEEDIRRMPALQGLEYPSKPDFDSQ 619
EQVFG DK+YWF+P Y+E+D +++PAL GL++ S+ + +++
Sbjct: 257 EQVFGSDKMYWFVPLYTEDDKKKLPALGGLDFTSRSESETE 297
>gb|AAM65313.1| unknown [Arabidopsis thaliana]
Length = 302
Score = 55.1 bits (131), Expect = 1e-06
Identities = 20/41 (48%), Positives = 34/41 (82%)
Frame = -1
Query: 741 EQVFGMDKIYWFIPAYSEEDIRRMPALQGLEYPSKPDFDSQ 619
EQVFG DK+YWF+P Y+E+D +++PAL GL++ S+ + +++
Sbjct: 257 EQVFGSDKMYWFVPLYTEDDKKKLPALGGLDFTSRSESETE 297
>pir||T04570 hypothetical protein T12H17.140 - Arabidopsis thaliana
gi|2827552|emb|CAA16560.1| predicted protein
[Arabidopsis thaliana] gi|7269121|emb|CAB79230.1|
predicted protein [Arabidopsis thaliana]
Length = 820
Score = 55.1 bits (131), Expect = 1e-06
Identities = 20/41 (48%), Positives = 34/41 (82%)
Frame = -1
Query: 741 EQVFGMDKIYWFIPAYSEEDIRRMPALQGLEYPSKPDFDSQ 619
EQVFG DK+YWF+P Y+E+D +++PAL GL++ S+ + +++
Sbjct: 775 EQVFGSDKMYWFVPLYTEDDKKKLPALGGLDFTSRSESETE 815
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 640,686,494
Number of Sequences: 1393205
Number of extensions: 14091476
Number of successful extensions: 29897
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 28995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29882
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 35469585522
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
