Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002940A_C05 KMC002940A_c05
(1078 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL35979.1|AF104392_1 extensin-like protein [Cucumis sativus] 183 5e-45
ref|NP_565348.1| expressed protein; protein id: At2g10940.1, sup... 173 5e-42
pir||S33621 ADR11-2 protein - soybean (fragment) gi|296443|emb|C... 169 9e-41
ref|NP_176439.1| putative proline-rich cell wall protein (pir|IS... 159 5e-38
pir||T14313 hypothetical protein - carrot gi|1794145|dbj|BAA1912... 156 5e-37
>gb|AAL35979.1|AF104392_1 extensin-like protein [Cucumis sativus]
Length = 219
Score = 183 bits (464), Expect = 5e-45
Identities = 110/238 (46%), Positives = 143/238 (59%), Gaps = 9/238 (3%)
Frame = -3
Query: 1055 MESSKIHAYLFLCMLFLSSAAPILGCGTCGKPVPKKHKP---SKKPGKPVKPPGI---VP 894
ME SKI++ +CMLF+SSA+PILGCG+C P+K KP SK P P+ P I +P
Sbjct: 5 MEPSKIYSLFLICMLFISSASPILGCGSCSGKPPRKTKPGSGSKSPKGPITLPPIPIKIP 64
Query: 893 PIVKPPGI-VPPIVKPPVILPPVTVPPVT-VPPITVPPVVKPTLPPIPGVTPILPPVPVL 720
P+V P + +PP+V +P V +PPV +P + +PPVV PIP P+LP P+L
Sbjct: 65 PVVPIPSVPIPPVVP----IPSVPIPPVVPIPSVPIPPVVPIPSVPIP---PVLPVPPIL 117
Query: 719 NPPSTPTPTTPGSGSCPPPKSPPGGGGGSQATCPIDTLKLGSCVDLLGGLIHIGLGDPAV 540
PS P TP CPP + TCPIDTLKLG CV+LLGGL+HIG+GDPA
Sbjct: 118 GKPS-PGVNTP----CPP---------SGKETCPIDTLKLGGCVNLLGGLVHIGIGDPAA 163
Query: 539 NKCCRCAFKGLWRLK-LLHVSAPL*SSSF*ISTSMCL*PLQLLVACGKTPPPGYTCSL 369
N CC GL L+ + + L + ++ + + LQLL+ CGKTPPPGYTCSL
Sbjct: 164 NACCP-IISGLAELEAAVCLCTTLKIKALDLNIYVPI-ALQLLITCGKTPPPGYTCSL 219
>ref|NP_565348.1| expressed protein; protein id: At2g10940.1, supported by cDNA:
32647., supported by cDNA: gi_17473864 [Arabidopsis
thaliana] gi|25411373|pir||G84494 hypothetical protein
At2g10940 [imported] - Arabidopsis thaliana
gi|4662641|gb|AAD26911.1| expressed protein [Arabidopsis
thaliana] gi|17473865|gb|AAL38354.1| unknown protein
[Arabidopsis thaliana] gi|22022562|gb|AAM83238.1|
At2g10940/F15K19.1 [Arabidopsis thaliana]
gi|23308313|gb|AAN18126.1| At2g10940/F15K19.1
[Arabidopsis thaliana]
Length = 291
Score = 173 bits (438), Expect = 5e-42
Identities = 98/205 (47%), Positives = 121/205 (58%), Gaps = 8/205 (3%)
Frame = -3
Query: 959 VPKKHKPSKKPGKPVKPPGIVPPIVKPPGIVPPIVKPPVILPPVTVPPVTVPPITVPPVV 780
VPK P K PP VP + PP VP + PPV +P + VPPVTVP + +PP+
Sbjct: 93 VPKLPVPPVTVPKLPVPPVTVPKLPVPPVTVPKLPVPPVTVPKLPVPPVTVPKLPLPPIS 152
Query: 779 KPTLPPIPGVTPILPPVPVLNP--PSTPTPTTPGSGSCPPPKS---PPGGGGGSQATCPI 615
+PP+ G LPP+P++ P P TP G CPPP PP GGG +ATCPI
Sbjct: 153 GLPIPPVVGPNLPLPPLPIVGPILPPGTTPPATGGKDCPPPPGSVKPPSGGG--KATCPI 210
Query: 614 DTLKLGSCVDLLGGLIHIGLGDPAVNKCCRCAFKGLWRLK---LLHVSAPL*SSSF*IST 444
DTLKLG+CVDLLGGL+ IGLGDPAVNKCC KGL ++ L + L + +
Sbjct: 211 DTLKLGACVDLLGGLVKIGLGDPAVNKCCP-LLKGLVEVEAAACLCTTLKLKALDLNLYV 269
Query: 443 SMCL*PLQLLVACGKTPPPGYTCSL 369
+ LQLL+ CGK PPPGYTCS+
Sbjct: 270 PVA---LQLLLTCGKNPPPGYTCSI 291
>pir||S33621 ADR11-2 protein - soybean (fragment) gi|296443|emb|CAA49341.1|
auxin down regulated [Glycine max]
Length = 151
Score = 169 bits (427), Expect = 9e-41
Identities = 93/180 (51%), Positives = 114/180 (62%), Gaps = 14/180 (7%)
Frame = -3
Query: 866 PPIVKPPVILPPVTVPPVTVPPITVPPVVKPTLPPIPGVTPILPPVPVLNPPSTPTPTTP 687
P K PV+ PPVT+PP+ VPP+ +PP+VKP PG ILPP+P++NPP+TP
Sbjct: 3 PKTPKTPVVKPPVTIPPINVPPVVLPPIVKP-----PG---ILPPIPIINPPTTPGKG-- 52
Query: 686 GSGSCPPPKSPPGGGGGSQATCPIDTLKLGSCVDLLGGLIHIGLGDPAVNKCCRCAFKGL 507
G+ CPPPKSP +QATCPIDTLKLG+CVDLLGGL+HIGLGDP N+CC +GL
Sbjct: 53 GNTPCPPPKSP------AQATCPIDTLKLGACVDLLGGLVHIGLGDPVANQCCP-VLQGL 105
Query: 506 ------------WRLKLLHVS--APL*SSSF*ISTSMCL*PLQLLVACGKTPPPGYTCSL 369
+LKLL+++ PL LQLLV CGK+PPPGYTCSL
Sbjct: 106 VEVEAAVCLCTTLKLKLLNLNIYVPL--------------ALQLLVTCGKSPPPGYTCSL 151
>ref|NP_176439.1| putative proline-rich cell wall protein (pir|IS52985); similar to
ESTs gb|AI239404, gb|R89984, and emb|Z17709; protein id:
At1g62500.1, supported by cDNA: 36784., supported by
cDNA: gi_15028318, supported by cDNA: gi_19310692
[Arabidopsis thaliana]
gi|5454192|gb|AAD43607.1|AC005698_6 T3P18.6 [Arabidopsis
thaliana] gi|15028319|gb|AAK76636.1| putative
proline-rich cell wall protein [Arabidopsis thaliana]
gi|19310693|gb|AAL85077.1| putative proline-rich cell
wall protein [Arabidopsis thaliana]
gi|21593172|gb|AAM65121.1| putative proline-rich cell
wall protein [Arabidopsis thaliana]
Length = 297
Score = 159 bits (403), Expect = 5e-38
Identities = 96/217 (44%), Positives = 120/217 (55%), Gaps = 30/217 (13%)
Frame = -3
Query: 935 KKPGKPVKPPGIV--PPIVKPPGIV--PPIVKPPVILPPVTVPPVTVPPITVPPVVKPT- 771
+ P V+PP I+ PP+V PP IV PPI +PP+I+PP+ PPVT PP +PP+ P
Sbjct: 93 RPPPVVVRPPPIIRPPPVVYPPPIVRPPPITRPPIIIPPIQPPPVTTPPGLLPPITTPPG 152
Query: 770 -LPPIPGVTPILPPV--------PVLNPPSTPTPTTPGSGSCP--PPKSPPGGGGGSQAT 624
LPP+ +LPPV P++NPP P P SG P PP GGGGG Q T
Sbjct: 153 LLPPVTTPPGLLPPVTTPPGLLPPIINPPPVTVPP-PSSGYPPYGPPSGGGGGGGGKQPT 211
Query: 623 CPIDTLKLGSCVDLLGGLIHIGLGDPAVNKCCRCAFKGLW------------RLKLLHVS 480
CPI+ LKLG+CVD+LGGLIHIGLG+P N CC +GL RLKLL+++
Sbjct: 212 CPINALKLGACVDVLGGLIHIGLGNPVENVCCP-VLQGLLELEAAVCLCTTIRLKLLNLN 270
Query: 479 --APL*SSSF*ISTSMCL*PLQLLVACGKTPPPGYTC 375
PL LQ L+ CG PP G+ C
Sbjct: 271 IFIPL--------------ALQALITCGINPPSGFVC 293
>pir||T14313 hypothetical protein - carrot gi|1794145|dbj|BAA19128.1| unnamed
protein product [Daucus carota]
Length = 347
Score = 156 bits (395), Expect = 5e-37
Identities = 91/191 (47%), Positives = 122/191 (63%), Gaps = 9/191 (4%)
Frame = -3
Query: 920 PVKPPGIVPPIVKPPGIVPPIVKPPV-ILPPVTVPPVTVPPITVPPVVKPTLPPIPGVTP 744
P PPG++PP V PPG++PP +KPP +LPP +PP +PP +PP + P PG+ P
Sbjct: 165 PPLPPGVLPPGVLPPGVLPPGIKPPGGLLPPGVLPPGVLPPGILPPGILPPGVLPPGILP 224
Query: 743 --ILPP--VPVLNPPST--PTPTTPGSGSCPP-PKSPPGGGGGSQATCPIDTLKLGSCVD 585
ILPP P + PP+T P+P TP CPP K+PP + TCP+D LKLG+CVD
Sbjct: 225 PGILPPGVKPPVLPPTTKPPSPGTP----CPPGAKTPP----SAPETCPLDALKLGACVD 276
Query: 584 LLGGLIHIGLGDPAVNKCCRCAFKGLWRLK-LLHVSAPL*SSSF*ISTSMCL*PLQLLVA 408
+LGGL+H+GLGDP VNKCC GL L+ + + + S I+ ++ + LQLL+
Sbjct: 277 VLGGLVHVGLGDPNVNKCCP-VLAGLVELEAAVCLCTTIKLSLLNINIALPV-ALQLLIT 334
Query: 407 CGKTPPPGYTC 375
CGKTPPPG+TC
Sbjct: 335 CGKTPPPGFTC 345
Score = 117 bits (294), Expect = 2e-25
Identities = 65/135 (48%), Positives = 80/135 (59%), Gaps = 11/135 (8%)
Frame = -3
Query: 1016 MLFLSSAAPILGCGTCGKPVPKKHKPSKKPGKPVKPPGIVPPIVKPPGIVPPIVKPPVIL 837
M F S+A P+L CG+C KP P HKP+ VKPP + PPIVKPP + PP+VKPPV+
Sbjct: 1 MFFFSTANPVLDCGSCEKP-PPHHKPAPHKPPTVKPPVVKPPIVKPPVVKPPVVKPPVVK 59
Query: 836 PPVTVPPVTVPPITVPPVVKP-TLPP---IPGVTP--ILPPVP--VLNPPSTPTPTTPGS 681
PP+ PP+ PP +PP++ P LPP PGV P +LPP+P VL P P P
Sbjct: 60 PPIVKPPIVKPPGLLPPILPPGILPPGVLPPGVLPPGVLPPLPPGVLPPGILPPGVLPPG 119
Query: 680 GSCP---PPKSPPGG 645
P PP PPGG
Sbjct: 120 VLPPGVVPPIKPPGG 134
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,109,311,709
Number of Sequences: 1393205
Number of extensions: 33057719
Number of successful extensions: 414430
Number of sequences better than 10.0: 7087
Number of HSP's better than 10.0 without gapping: 147825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281911
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 64568047518
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
