Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002936A_C01 KMC002936A_c01
(546 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566211.1| expressed protein; protein id: At3g03610.1, sup... 134 6e-39
gb|AAF03471.1|AC009327_10 hypothetical protein [Arabidopsis thal... 134 6e-39
gb|AAM63875.1| unknown [Arabidopsis thaliana] 132 2e-38
ref|NP_171859.1| hypothetical protein; protein id: At1g03620.1 [... 107 1e-30
emb|CAC39036.1| putative protein [Oryza sativa] 100 1e-27
>ref|NP_566211.1| expressed protein; protein id: At3g03610.1, supported by cDNA:
28199., supported by cDNA: gi_18377968 [Arabidopsis
thaliana] gi|18377969|gb|AAL67127.1| unknown protein
[Arabidopsis thaliana] gi|21436073|gb|AAM51237.1|
unknown protein [Arabidopsis thaliana]
Length = 323
Score = 134 bits (336), Expect(2) = 6e-39
Identities = 62/75 (82%), Positives = 69/75 (91%)
Frame = -3
Query: 544 LHKQDGARAEWEYPFAVAGINISFMLAQMLDLQAGYPSSLSGFRFLQLLEEDEMAFDILY 365
LHKQDG RAEWEYPFAVAGINISFMLAQMLDLQ+G PS+++G RFL LEEDEMAFD LY
Sbjct: 209 LHKQDGTRAEWEYPFAVAGINISFMLAQMLDLQSGKPSTIAGIRFLGFLEEDEMAFDNLY 268
Query: 364 CVAYQMMDAQWLAKR 320
C+A+QMMDAQWLA+R
Sbjct: 269 CIAFQMMDAQWLARR 283
Score = 48.5 bits (114), Expect(2) = 6e-39
Identities = 22/26 (84%), Positives = 25/26 (95%)
Frame = -1
Query: 318 ATYMEFNDVLKSTRTQLERELALEDI 241
A+YMEFNDVLKSTR QLERELAL+D+
Sbjct: 284 ASYMEFNDVLKSTRAQLERELALDDV 309
>gb|AAF03471.1|AC009327_10 hypothetical protein [Arabidopsis thaliana]
Length = 182
Score = 134 bits (336), Expect(2) = 6e-39
Identities = 62/75 (82%), Positives = 69/75 (91%)
Frame = -3
Query: 544 LHKQDGARAEWEYPFAVAGINISFMLAQMLDLQAGYPSSLSGFRFLQLLEEDEMAFDILY 365
LHKQDG RAEWEYPFAVAGINISFMLAQMLDLQ+G PS+++G RFL LEEDEMAFD LY
Sbjct: 68 LHKQDGTRAEWEYPFAVAGINISFMLAQMLDLQSGKPSTIAGIRFLGFLEEDEMAFDNLY 127
Query: 364 CVAYQMMDAQWLAKR 320
C+A+QMMDAQWLA+R
Sbjct: 128 CIAFQMMDAQWLARR 142
Score = 48.5 bits (114), Expect(2) = 6e-39
Identities = 22/26 (84%), Positives = 25/26 (95%)
Frame = -1
Query: 318 ATYMEFNDVLKSTRTQLERELALEDI 241
A+YMEFNDVLKSTR QLERELAL+D+
Sbjct: 143 ASYMEFNDVLKSTRAQLERELALDDV 168
>gb|AAM63875.1| unknown [Arabidopsis thaliana]
Length = 323
Score = 132 bits (332), Expect(2) = 2e-38
Identities = 61/75 (81%), Positives = 68/75 (90%)
Frame = -3
Query: 544 LHKQDGARAEWEYPFAVAGINISFMLAQMLDLQAGYPSSLSGFRFLQLLEEDEMAFDILY 365
LHKQDG RAEWEYPFAVAGINISFMLAQMLDLQ+G PS+++G RFL LEEDEMAFD LY
Sbjct: 209 LHKQDGTRAEWEYPFAVAGINISFMLAQMLDLQSGKPSTIAGIRFLGFLEEDEMAFDNLY 268
Query: 364 CVAYQMMDAQWLAKR 320
C+ +QMMDAQWLA+R
Sbjct: 269 CIVFQMMDAQWLARR 283
Score = 48.5 bits (114), Expect(2) = 2e-38
Identities = 22/26 (84%), Positives = 25/26 (95%)
Frame = -1
Query: 318 ATYMEFNDVLKSTRTQLERELALEDI 241
A+YMEFNDVLKSTR QLERELAL+D+
Sbjct: 284 ASYMEFNDVLKSTRAQLERELALDDV 309
>ref|NP_171859.1| hypothetical protein; protein id: At1g03620.1 [Arabidopsis
thaliana]
Length = 265
Score = 107 bits (268), Expect(3) = 1e-30
Identities = 54/74 (72%), Positives = 59/74 (78%), Gaps = 1/74 (1%)
Frame = -3
Query: 544 LHKQDGARAEWEYPFAVAGINISFMLAQMLDLQAG-YPSSLSGFRFLQLLEEDEMAFDIL 368
L KQ G RA+WEYPFAVAGINISFML QMLDLQ P L G FL+LLEEDE AFD+L
Sbjct: 150 LLKQRGDRAKWEYPFAVAGINISFMLIQMLDLQNNPKPKCLPGMNFLKLLEEDERAFDVL 209
Query: 367 YCVAYQMMDAQWLA 326
YC+A+ MMDAQWLA
Sbjct: 210 YCIAFAMMDAQWLA 223
Score = 44.7 bits (104), Expect(3) = 1e-30
Identities = 19/28 (67%), Positives = 27/28 (95%)
Frame = -1
Query: 318 ATYMEFNDVLKSTRTQLERELALEDIYQ 235
A+YMEFN+VL++TR QLEREL+L+DI++
Sbjct: 226 ASYMEFNEVLQATRNQLERELSLDDIHR 253
Score = 22.3 bits (46), Expect(3) = 1e-30
Identities = 7/11 (63%), Positives = 11/11 (99%)
Frame = -2
Query: 236 RVKDLPSYNML 204
R++DLP+YN+L
Sbjct: 253 RIQDLPAYNLL 263
>emb|CAC39036.1| putative protein [Oryza sativa]
Length = 269
Score = 99.8 bits (247), Expect(2) = 1e-27
Identities = 46/72 (63%), Positives = 57/72 (78%)
Frame = -3
Query: 544 LHKQDGARAEWEYPFAVAGINISFMLAQMLDLQAGYPSSLSGFRFLQLLEEDEMAFDILY 365
L KQ+G RA WEYPFAVAG+NI+FML QMLDLQ+ P S G FL+LL E++ AFDILY
Sbjct: 155 LRKQNGDRAIWEYPFAVAGVNITFMLIQMLDLQSVKPRSFIGAVFLKLLSENDQAFDILY 214
Query: 364 CVAYQMMDAQWL 329
C+ +++MD QWL
Sbjct: 215 CITFKLMDQQWL 226
Score = 45.1 bits (105), Expect(2) = 1e-27
Identities = 22/30 (73%), Positives = 25/30 (83%)
Frame = -1
Query: 318 ATYMEFNDVLKSTRTQLERELALEDIYQGE 229
ATYM+FN V+KSTR QLEREL LEDI + E
Sbjct: 230 ATYMDFNTVMKSTRRQLERELLLEDIQRIE 259
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 463,649,182
Number of Sequences: 1393205
Number of extensions: 9187398
Number of successful extensions: 20575
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 20069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20554
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
