>KMC002934A_C01 KMC002934A_c01
ggatgGACAAGCAACAGCAGGCCCGGTCTTTCGCTTTGGTATTTGATTCGCTCACATCGT
ATATCAGTACAAAGTTACAAACAAATAAACCAGATGCAAATAATTAAGCAATACATTTTT
CCCATGACATTGACTTATGCACATTAGAGAGAAATTATTCCTCACTTTACTAACTTACGT
ACAAGAATATTTATTATTGAGGGGTTGCCCAAAATCATCTACACATGAGGTGATGCTAGC
TTCTTCAATCTCAAGTAATAATAATATGCTACAACAACATCGCAACATCCCCTCCTCTTT
TCACCCCACCAACACTTGAACTTCACTTCAACTTGATCCCTTTGCTTATTTCTCAAAATT
ACACAATATTCCTATTCCTCCACTTTTTAACTTTGATTTTGCCTTGGCCATTAAGCACTT
ACTTACCGTGCTTTACCAACATGGAATCATTGATTAACAAGCAGGATTAATCCATCACTC
TAATTTATCCACCCACTCTGCAGCAATCCTTCCAGAACTTCGGCCGGCCAATTTCCCGAA
TGTTAATCCCTTGAAGCTGCTACTACCACCACAGTCATTCATGTTTCTCGGTTTCCTTGA
CTTGCTAATCTTGGAAC

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC002934A_C01 KMC002934A_c01
         (617 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_180450.1| putative RING zinc finger ankyrin protein; prot...    36  0.35
gb|AAK68782.1| putative RING zinc finger ankyrin protein [Arabid...    36  0.35
sp|O41174|POLG_PEV9U Genome polyprotein [Contains: Coat protein ...    33  2.3
ref|NP_758520.1| polyprotein [Porcine enterovirus B] gi|19880256...    33  2.3
ref|NP_758540.1| 3D (RNA-dependent RNA polymerase) [Porcine ente...    33  2.3

>ref|NP_180450.1| putative RING zinc finger ankyrin protein; protein id: At2g28840.1,
           supported by cDNA: gi_13926221 [Arabidopsis thaliana]
           gi|25408016|pir||E84689 probable RING zinc finger
           ankyrin protein [imported] - Arabidopsis thaliana
           gi|3927831|gb|AAC79588.1| putative RING zinc finger
           ankyrin protein [Arabidopsis thaliana]
           gi|13926222|gb|AAK49587.1|AF370581_1 putative RING zinc
           finger ankyrin protein [Arabidopsis thaliana]
          Length = 426

 Score = 36.2 bits (82), Expect = 0.35
 Identities = 22/44 (50%), Positives = 28/44 (63%), Gaps = 4/44 (9%)
 Frame = -3

Query: 615 SKISKSRKPRNMNDCGGSSSFKGLT----FGKLAGRSSGRIAAE 496
           SK  K R+  N+ +   SSSF GL+    FG++ GR SGRIAAE
Sbjct: 376 SKFRKHRRSINLGE--ESSSFMGLSTIGSFGRITGRGSGRIAAE 417

>gb|AAK68782.1| putative RING zinc finger ankyrin protein [Arabidopsis thaliana]
           gi|20148259|gb|AAM10020.1| putative RING zinc finger
           ankyrin protein [Arabidopsis thaliana]
           gi|23397172|gb|AAN31869.1| putative RING zinc finger
           ankyrin protein [Arabidopsis thaliana]
          Length = 456

 Score = 36.2 bits (82), Expect = 0.35
 Identities = 22/44 (50%), Positives = 28/44 (63%), Gaps = 4/44 (9%)
 Frame = -3

Query: 615 SKISKSRKPRNMNDCGGSSSFKGLT----FGKLAGRSSGRIAAE 496
           SK  K R+  N+ +   SSSF GL+    FG++ GR SGRIAAE
Sbjct: 406 SKFRKHRRSINLGE--ESSSFMGLSTIGSFGRITGRGSGRIAAE 447

>sp|O41174|POLG_PEV9U Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat protein
            VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1
            (P1D); Picornain 2A (P2A); Core protein P2B; Core protein
            P2C; Core protein P3A; Genome-linked protein VPG (P3B);
            Picornain 3C (Protease 3C) (P3C); RNA-directed RNA
            polymerase (P3D)] gi|2326788|emb|CAA74807.1| polyprotein
            [Porcine enterovirus 9]
          Length = 2168

 Score = 33.5 bits (75), Expect = 2.3
 Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
 Frame = +2

Query: 155  LFLTLLTYVQEYLLLRGCPKSSTHEVMLASSISSNNNMLQQHRNIPSSFHP---TNT*TS 325
            L L ++TY+++ L  +   K     ++ ASS++ +  M     N+  +FH    T T  +
Sbjct: 1857 LNLPMVTYIKDELRSKEKVKKGKSRLIEASSLNDSVAMRCYFGNLYKAFHQNPGTLTGCA 1916

Query: 326  LQLDPFAYFSKLHNIPIPPLFNFDFALAIKHLLTVLYQ 439
            +  DP  ++SK+  +    LF FD+      L  +++Q
Sbjct: 1917 VGCDPDTFWSKIPVMMDGELFGFDYTAYDASLSPLMFQ 1954

>ref|NP_758520.1| polyprotein [Porcine enterovirus B]
            gi|19880256|gb|AAM00274.1|AF363453_1 polyprotein [porcine
            enterovirus 9]
          Length = 2168

 Score = 33.5 bits (75), Expect = 2.3
 Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
 Frame = +2

Query: 155  LFLTLLTYVQEYLLLRGCPKSSTHEVMLASSISSNNNMLQQHRNIPSSFHP---TNT*TS 325
            L L ++TY+++ L  +   K     ++ ASS++ +  M     N+  +FH    T T  +
Sbjct: 1857 LNLPMVTYIKDELRSKEKVKKGKSRLIEASSLNDSVAMRCYFGNLYKAFHQNPGTLTGCA 1916

Query: 326  LQLDPFAYFSKLHNIPIPPLFNFDFALAIKHLLTVLYQ 439
            +  DP  ++SK+  +    LF FD+      L  +++Q
Sbjct: 1917 VGCDPDTFWSKIPVMMDGELFGFDYTAYDASLSPLMFQ 1954

>ref|NP_758540.1| 3D (RNA-dependent RNA polymerase) [Porcine enterovirus B]
          Length = 461

 Score = 33.5 bits (75), Expect = 2.3
 Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
 Frame = +2

Query: 155 LFLTLLTYVQEYLLLRGCPKSSTHEVMLASSISSNNNMLQQHRNIPSSFHP---TNT*TS 325
           L L ++TY+++ L  +   K     ++ ASS++ +  M     N+  +FH    T T  +
Sbjct: 150 LNLPMVTYIKDELRSKEKVKKGKSRLIEASSLNDSVAMRCYFGNLYKAFHQNPGTLTGCA 209

Query: 326 LQLDPFAYFSKLHNIPIPPLFNFDFALAIKHLLTVLYQ 439
           +  DP  ++SK+  +    LF FD+      L  +++Q
Sbjct: 210 VGCDPDTFWSKIPVMMDGELFGFDYTAYDASLSPLMFQ 247

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 510,845,978
Number of Sequences: 1393205
Number of extensions: 10702005
Number of successful extensions: 25103
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 24409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25098
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 24733321959
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 GNf007a05 BP067847 1 423 2 MWL002d09_f AV768615 4 502 3 MF099b05_f BP033434 191 620

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