Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002931A_C01 KMC002931A_c01
(769 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568535.1| transmembrane protein FT27/PFT27-like; protein ... 201 2e-55
dbj|BAB09369.1| transmembrane protein FT27/PFT27-like [Arabidops... 197 1e-49
gb|AAH03545.1|AAH03545 Unknown (protein for MGC:10813) [Homo sap... 99 9e-20
ref|NP_060945.1| TPA regulated locus; uncharacterized hypothalam... 99 9e-20
gb|AAG09678.1|AF183409_1 transmembrane protein PT27 [Homo sapien... 99 9e-20
>ref|NP_568535.1| transmembrane protein FT27/PFT27-like; protein id: At5g36290.1,
supported by cDNA: 12993., supported by cDNA:
gi_15450793 [Arabidopsis thaliana]
gi|15450794|gb|AAK96668.1| transmembrane protein
FT27/PFT27-like [Arabidopsis thaliana]
gi|21537321|gb|AAM61662.1| transmembrane protein
FT27/PFT27-like [Arabidopsis thaliana]
Length = 293
Score = 201 bits (510), Expect(2) = 2e-55
Identities = 98/110 (89%), Positives = 107/110 (97%)
Frame = -1
Query: 769 IAWRSSDSKTSQKKEMEEVEEKLEGGQGKTSFRRFFSRFCTPIFLESFILTFLAEWGDRS 590
IAWRS+DSK++QKKEMEEVEEKLE GQGKT FRR FSRFCTPIFLESFILTFLAEWGDRS
Sbjct: 166 IAWRSTDSKSNQKKEMEEVEEKLESGQGKTPFRRLFSRFCTPIFLESFILTFLAEWGDRS 225
Query: 589 QIATIALATHKNALGVAVGATIGHTICTSVAVVGGSMLASKISQRTVATV 440
QIATIALATHKNA+GVA+GA+IGHT+CTS+AVVGGSMLAS+ISQRTVATV
Sbjct: 226 QIATIALATHKNAIGVAIGASIGHTVCTSLAVVGGSMLASRISQRTVATV 275
Score = 38.1 bits (87), Expect(2) = 2e-55
Identities = 16/17 (94%), Positives = 17/17 (99%)
Frame = -2
Query: 435 GLLFLGFSVSSYYYPPL 385
GLLFLGFSVSSY+YPPL
Sbjct: 277 GLLFLGFSVSSYFYPPL 293
>dbj|BAB09369.1| transmembrane protein FT27/PFT27-like [Arabidopsis thaliana]
Length = 325
Score = 197 bits (502), Expect = 1e-49
Identities = 99/128 (77%), Positives = 113/128 (87%)
Frame = -1
Query: 769 IAWRSSDSKTSQKKEMEEVEEKLEGGQGKTSFRRFFSRFCTPIFLESFILTFLAEWGDRS 590
IAWRS+DSK++QKKEMEEVEEKLE GQGKT FRR FSRFCTPIFLESFILTFLAEWGDRS
Sbjct: 166 IAWRSTDSKSNQKKEMEEVEEKLESGQGKTPFRRLFSRFCTPIFLESFILTFLAEWGDRS 225
Query: 589 QIATIALATHKNALGVAVGATIGHTICTSVAVVGGSMLASKISQRTVATVAWFALPRLFS 410
QIATIALATHKNA+GVA+GA+IGHT+CTS+AVVGGSMLAS+ISQRT+A + P+ S
Sbjct: 226 QIATIALATHKNAIGVAIGASIGHTVCTSLAVVGGSMLASRISQRTLADHVYEVSPKPRS 285
Query: 409 VFILLPSS 386
I + +S
Sbjct: 286 ETITVSTS 293
>gb|AAH03545.1|AAH03545 Unknown (protein for MGC:10813) [Homo sapiens]
Length = 205
Score = 98.6 bits (244), Expect = 9e-20
Identities = 55/125 (44%), Positives = 74/125 (59%), Gaps = 8/125 (6%)
Frame = -1
Query: 736 QKKEMEEVEEKLEGGQGK-------TSFRRFFSRFCTPIFLESFILTFLAEWGDRSQIAT 578
+KK+ E KL G G T ++ + F +PIF+++ LTFLAEWGDRSQ+ T
Sbjct: 79 KKKDEEFQRTKLLNGPGDVETGTSITVPQKKWLHFISPIFVQALTLTFLAEWGDRSQLTT 138
Query: 577 IALATHKNALGVAVGATIGHTICTSVAVVGGSMLASKISQRTVATVAWFA-LPRLFSVFI 401
I LA ++ GVAVG T+GH +CT +AV+GG M+A KIS RTV + L FS
Sbjct: 139 IVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFAFSALF 198
Query: 400 LLPSS 386
+ P S
Sbjct: 199 ISPDS 203
>ref|NP_060945.1| TPA regulated locus; uncharacterized hypothalamus protein HTMP
[Homo sapiens] gi|7689027|gb|AAF67653.1|AF220188_1
uncharacterized hypothalamus protein HTMP [Homo sapiens]
Length = 324
Score = 98.6 bits (244), Expect = 9e-20
Identities = 55/125 (44%), Positives = 74/125 (59%), Gaps = 8/125 (6%)
Frame = -1
Query: 736 QKKEMEEVEEKLEGGQGK-------TSFRRFFSRFCTPIFLESFILTFLAEWGDRSQIAT 578
+KK+ E KL G G T ++ + F +PIF+++ LTFLAEWGDRSQ+ T
Sbjct: 198 KKKDEEFQRTKLLNGPGDVETGTSITVPQKKWLHFISPIFVQALTLTFLAEWGDRSQLTT 257
Query: 577 IALATHKNALGVAVGATIGHTICTSVAVVGGSMLASKISQRTVATVAWFA-LPRLFSVFI 401
I LA ++ GVAVG T+GH +CT +AV+GG M+A KIS RTV + L FS
Sbjct: 258 IVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFAFSALF 317
Query: 400 LLPSS 386
+ P S
Sbjct: 318 ISPDS 322
>gb|AAG09678.1|AF183409_1 transmembrane protein PT27 [Homo sapiens]
gi|18568117|gb|AAL75947.1|AF132746_1 transmembrane
protein [Homo sapiens]
Length = 324
Score = 98.6 bits (244), Expect = 9e-20
Identities = 55/125 (44%), Positives = 74/125 (59%), Gaps = 8/125 (6%)
Frame = -1
Query: 736 QKKEMEEVEEKLEGGQGK-------TSFRRFFSRFCTPIFLESFILTFLAEWGDRSQIAT 578
+KK+ E KL G G T ++ + F +PIF+++ LTFLAEWGDRSQ+ T
Sbjct: 198 KKKDEEFQRTKLLNGPGDVETGTSITVPQKKWLHFISPIFVQALTLTFLAEWGDRSQLTT 257
Query: 577 IALATHKNALGVAVGATIGHTICTSVAVVGGSMLASKISQRTVATVAWFA-LPRLFSVFI 401
I LA ++ GVAVG T+GH +CT +AV+GG M+A KIS RTV + L FS
Sbjct: 258 IVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFAFSALF 317
Query: 400 LLPSS 386
+ P S
Sbjct: 318 ISPDS 322
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 702,261,639
Number of Sequences: 1393205
Number of extensions: 16936421
Number of successful extensions: 50600
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 47501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50526
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 37534933228
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
