Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002928A_C01 KMC002928A_c01
(511 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T18283 hypothetical protein G5 - slime mold (Dictyostelium ... 40 0.020
emb|CAA11444.1| intermediate filament protein C1 [Branchiostoma ... 39 0.027
gb|AAM21558.1|AF446007_1 MEK1 interacting protein 1 [Dictyosteli... 35 0.66
ref|XP_286653.1| hypothetical protein XP_286653 [Mus musculus] 35 0.66
gb|EAA33406.1| hypothetical protein [Neurospora crassa] 28 0.74
>pir||T18283 hypothetical protein G5 - slime mold (Dictyostelium discoideum)
gi|2702258|gb|AAC18634.1| G5 ORF [Dictyostelium
discoideum]
Length = 325
Score = 39.7 bits (91), Expect = 0.020
Identities = 27/109 (24%), Positives = 51/109 (46%)
Frame = +3
Query: 51 ENLIISLSLCGAVVANRRLSKPDRRLSKPDRRLPKPDRRLRRSDQIRSA*KSMGNNDENQ 230
E + S +LC + A + + +R +LP+ + ++ +E +
Sbjct: 128 EIFLESCTLCKEITAQTKRNSYKKR--NIINKLPEEEEEEEEEEEEEE------EEEEQE 179
Query: 231 QHNITTTVKEEEEEEAPAVYNDENQQHNITIVQEEEQAPAVYK*PKDDQ 377
+ T+ EEEEEE PAV +E ++ +EEE+ PAV + K+++
Sbjct: 180 EEVEKPTISEEEEEETPAVSEEEKEEEE----EEEEETPAVSEEEKEEE 224
>emb|CAA11444.1| intermediate filament protein C1 [Branchiostoma floridae]
Length = 839
Score = 39.3 bits (90), Expect = 0.027
Identities = 18/37 (48%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Frame = +1
Query: 97 IGGYRSQIGGYQSQIGGYQSQIGD*EDQIRS-DQRRK 204
I GY+SQI GY ++I GY+S+I +D++R D RR+
Sbjct: 411 IDGYKSQIAGYTAEINGYRSEIASLQDRLRELDARRE 447
>gb|AAM21558.1|AF446007_1 MEK1 interacting protein 1 [Dictyostelium discoideum]
Length = 577
Score = 34.7 bits (78), Expect = 0.66
Identities = 16/63 (25%), Positives = 34/63 (53%)
Frame = +3
Query: 153 KPDRRLRRSDQIRSA*KSMGNNDENQQHNITTTVKEEEEEEAPAVYNDENQQHNITIVQE 332
K + ++++++ + + N +E Q + V+E++E +N+EN+Q N +E
Sbjct: 77 KQNEEVKQNEEEKQNEEVKQNEEEKQNEEVKQNVEEKQENRENEQHNEENEQQNGEQNKE 136
Query: 333 EEQ 341
EEQ
Sbjct: 137 EEQ 139
>ref|XP_286653.1| hypothetical protein XP_286653 [Mus musculus]
Length = 115
Score = 34.7 bits (78), Expect = 0.66
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = -3
Query: 374 VILGLFVYCWSLLLLLHYCNIVLLVLIVVYCW-SLLLLLLFHCCCNIVLLVL 222
++L FV+ +L+L +C + L V C+ SL L +LF CCCN+ VL
Sbjct: 45 IVLSDFVF----VLILCFCAFKCVCLSVNMCFFSLSLSILFCCCCNVFCFVL 92
>gb|EAA33406.1| hypothetical protein [Neurospora crassa]
Length = 2573
Score = 27.7 bits (60), Expect(2) = 0.74
Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 14/88 (15%)
Frame = +2
Query: 53 KPDHLSLSLRGGGSESEVIEARSEVIKARSEVTKARSE--------------IKKIRSDQ 190
+PD L +R GS E+ R + + R T+ R + R D
Sbjct: 2284 RPDPLR-DIRESGSRREMSTDRGDRERDRGRETRDREPRDREPRSGLAPIQVVGDSREDS 2342
Query: 191 ISVEKYGKQR*EPTTQYYNNSERGGGGG 274
S+ G R + + Y +S RGG GG
Sbjct: 2343 SSIPHGGHSRGDVNGEGYGSSSRGGAGG 2370
Score = 25.4 bits (54), Expect(2) = 0.74
Identities = 15/41 (36%), Positives = 19/41 (45%), Gaps = 2/41 (4%)
Frame = +2
Query: 260 GGGGGGSSSIQR*EPTTQY--YNSARGGAGSSSIQIAQG*P 376
GGGGGG + + Y + +RGG G S A G P
Sbjct: 2402 GGGGGGGGDGKESSSRSDYSRESRSRGGGGGPSTANAPGGP 2442
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 476,165,659
Number of Sequences: 1393205
Number of extensions: 11323535
Number of successful extensions: 72345
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 48764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67846
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
