Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002926A_C01 KMC002926A_c01
(793 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB01468.1| emb|CAB10262.1~gene_id:F16J14.9~similar to unkno... 63 6e-09
ref|NP_193219.1| hypothetical protein; protein id: At4g14830.1 [... 63 6e-09
ref|NP_566710.1| expressed protein; protein id: At3g22530.1, sup... 63 6e-09
gb|AAM62556.1| unknown [Arabidopsis thaliana] 59 8e-08
gb|AAN06850.1| Hypothetical protein [Oryza sativa (japonica cult... 46 5e-04
>dbj|BAB01468.1| emb|CAB10262.1~gene_id:F16J14.9~similar to unknown protein
[Arabidopsis thaliana]
Length = 167
Score = 62.8 bits (151), Expect = 6e-09
Identities = 32/71 (45%), Positives = 45/71 (63%)
Frame = -1
Query: 787 VRAHAVEILPGITKIVIRRLDGGDVAVTGHQRQQPRFGADLWRYRLPPWTQPEKVTAVCT 608
+RA+ VEI PGITKIV+R + ++ + + D+WR+RLP T+PE VT C
Sbjct: 76 MRAYMVEIHPGITKIVVRTNGSSSLGLSLDELE-----LDVWRFRLPESTRPELVTVACV 130
Query: 607 GGKLVVTVPKS 575
G L+VTVPK+
Sbjct: 131 DGDLIVTVPKN 141
>ref|NP_193219.1| hypothetical protein; protein id: At4g14830.1 [Arabidopsis
thaliana] gi|7485090|pir||D71411 hypothetical protein -
Arabidopsis thaliana gi|2244840|emb|CAB10262.1|
hypothetical protein [Arabidopsis thaliana]
gi|7268229|emb|CAB78525.1| hypothetical protein
[Arabidopsis thaliana]
Length = 152
Score = 62.8 bits (151), Expect = 6e-09
Identities = 34/76 (44%), Positives = 48/76 (62%), Gaps = 1/76 (1%)
Frame = -1
Query: 790 GVRAHAVEILPGITKIVIRRLDGGDVAVTGHQRQQPRFGADLWRYRLPPWTQPEKVTAVC 611
GVRA+ VEI PG+TKI++R + ++ + + D+WR+RLP T+PE VT C
Sbjct: 73 GVRAYMVEIHPGVTKILVRTNGSSSLGLSLDELE-----LDVWRFRLPESTRPELVTVDC 127
Query: 610 TG-GKLVVTVPKSRGN 566
G G+L+VTVPK N
Sbjct: 128 DGDGELIVTVPKIEDN 143
>ref|NP_566710.1| expressed protein; protein id: At3g22530.1, supported by cDNA:
14572., supported by cDNA: gi_18252912 [Arabidopsis
thaliana] gi|18252913|gb|AAL62383.1| unknown protein
[Arabidopsis thaliana] gi|23197926|gb|AAN15490.1|
unknown protein [Arabidopsis thaliana]
Length = 198
Score = 62.8 bits (151), Expect = 6e-09
Identities = 32/71 (45%), Positives = 45/71 (63%)
Frame = -1
Query: 787 VRAHAVEILPGITKIVIRRLDGGDVAVTGHQRQQPRFGADLWRYRLPPWTQPEKVTAVCT 608
+RA+ VEI PGITKIV+R + ++ + + D+WR+RLP T+PE VT C
Sbjct: 107 MRAYMVEIHPGITKIVVRTNGSSSLGLSLDELE-----LDVWRFRLPESTRPELVTVACV 161
Query: 607 GGKLVVTVPKS 575
G L+VTVPK+
Sbjct: 162 DGDLIVTVPKN 172
>gb|AAM62556.1| unknown [Arabidopsis thaliana]
Length = 198
Score = 58.9 bits (141), Expect = 8e-08
Identities = 31/71 (43%), Positives = 44/71 (61%)
Frame = -1
Query: 787 VRAHAVEILPGITKIVIRRLDGGDVAVTGHQRQQPRFGADLWRYRLPPWTQPEKVTAVCT 608
+RA+ VEI PGITKIV+R + ++ + + D+WR+RLP T+PE VT
Sbjct: 107 MRAYMVEIHPGITKIVVRTNGSSSLGLSLDELE-----LDVWRFRLPESTRPELVTVASV 161
Query: 607 GGKLVVTVPKS 575
G L+VTVPK+
Sbjct: 162 DGDLIVTVPKN 172
>gb|AAN06850.1| Hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 176
Score = 46.2 bits (108), Expect = 5e-04
Identities = 29/73 (39%), Positives = 36/73 (48%)
Frame = -1
Query: 787 VRAHAVEILPGITKIVIRRLDGGDVAVTGHQRQQPRFGADLWRYRLPPWTQPEKVTAVCT 608
VR V I PG+ ++V++ GG V G D WR RLP + P A
Sbjct: 65 VRVRTVRIHPGVVRVVVQA-GGGGVHDDGDDDDME---LDKWRSRLPEASCPAMAVAGYV 120
Query: 607 GGKLVVTVPKSRG 569
G+LVVTVPK RG
Sbjct: 121 NGQLVVTVPKGRG 133
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 662,873,223
Number of Sequences: 1393205
Number of extensions: 14241932
Number of successful extensions: 37065
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 35787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37037
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 39775824764
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
