Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002925A_C02 KMC002925A_c02
(590 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM63076.1| PP2A regulatory subunit [Arabidopsis thaliana] 128 5e-29
ref|NP_568783.1| PP2A regulatory subunit; protein id: At5g53000.... 128 5e-29
dbj|BAA97140.1| PP2A regulatory subunit [Arabidopsis thaliana] 128 5e-29
gb|AAO72555.1| PP2A regulatory subunit-like protein [Oryza sativ... 120 2e-26
pir||T03608 chilling-induced protein - rice gi|984756|emb|CAA908... 118 5e-26
>gb|AAM63076.1| PP2A regulatory subunit [Arabidopsis thaliana]
Length = 405
Score = 128 bits (322), Expect = 5e-29
Identities = 58/90 (64%), Positives = 70/90 (77%), Gaps = 1/90 (1%)
Frame = -3
Query: 588 FQPSHRMPTMSIEEAGLKEMEIMNKWQETNVRLMEEANSSWYKEKKSKPGEDDDEDEDDD 409
FQPSHRMPTM IE+AGL EM IMN WQE + +EEA +SWY +K + E+D+ED+D+D
Sbjct: 316 FQPSHRMPTMCIEDAGLTEMNIMNDWQEQTKKAIEEATTSWYNDKPLRRKEEDEEDDDED 375
Query: 408 DAQ-ERARALDDWKDENPRGAGNSKLTPCG 322
D +ARA DDWKD+NPRGAGN KLTPCG
Sbjct: 376 DEPVMKARAFDDWKDDNPRGAGNKKLTPCG 405
>ref|NP_568783.1| PP2A regulatory subunit; protein id: At5g53000.1, supported by
cDNA: 19116., supported by cDNA: gi_5107032 [Arabidopsis
thaliana] gi|25369342|pir||T52307 serine/threonine
protein phosphatase PP2A-associated protein [imported] -
Arabidopsis thaliana gi|5107033|gb|AAD39930.1|AF133708_1
PP2A regulatory subunit [Arabidopsis thaliana]
gi|28393350|gb|AAO42099.1| putative PP2A regulatory
subunit [Arabidopsis thaliana]
Length = 405
Score = 128 bits (322), Expect = 5e-29
Identities = 58/90 (64%), Positives = 71/90 (78%), Gaps = 1/90 (1%)
Frame = -3
Query: 588 FQPSHRMPTMSIEEAGLKEMEIMNKWQETNVRLMEEANSSWYKEKKSKPGEDDDEDED-D 412
FQPSHRMPTM IE+AGL EM IMN WQE + +EEA +SWY +K + E+D+ED+D D
Sbjct: 316 FQPSHRMPTMCIEDAGLTEMNIMNDWQEQTKKAIEEATTSWYNDKPLRRKEEDEEDDDED 375
Query: 411 DDAQERARALDDWKDENPRGAGNSKLTPCG 322
++A +ARA DDWKD+NPRGAGN KLTPCG
Sbjct: 376 EEAVMKARAFDDWKDDNPRGAGNKKLTPCG 405
>dbj|BAA97140.1| PP2A regulatory subunit [Arabidopsis thaliana]
Length = 413
Score = 128 bits (322), Expect = 5e-29
Identities = 58/90 (64%), Positives = 71/90 (78%), Gaps = 1/90 (1%)
Frame = -3
Query: 588 FQPSHRMPTMSIEEAGLKEMEIMNKWQETNVRLMEEANSSWYKEKKSKPGEDDDEDED-D 412
FQPSHRMPTM IE+AGL EM IMN WQE + +EEA +SWY +K + E+D+ED+D D
Sbjct: 324 FQPSHRMPTMCIEDAGLTEMNIMNDWQEQTKKAIEEATTSWYNDKPLRRKEEDEEDDDED 383
Query: 411 DDAQERARALDDWKDENPRGAGNSKLTPCG 322
++A +ARA DDWKD+NPRGAGN KLTPCG
Sbjct: 384 EEAVMKARAFDDWKDDNPRGAGNKKLTPCG 413
>gb|AAO72555.1| PP2A regulatory subunit-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 418
Score = 120 bits (300), Expect = 2e-26
Identities = 53/89 (59%), Positives = 70/89 (78%)
Frame = -3
Query: 588 FQPSHRMPTMSIEEAGLKEMEIMNKWQETNVRLMEEANSSWYKEKKSKPGEDDDEDEDDD 409
FQPS+R+PTMSIEEAGL+EM++M KWQE ++++E+NS+W+K+ ED+D +E
Sbjct: 336 FQPSYRLPTMSIEEAGLREMKMMEKWQERTAKMIQESNSAWHKDGSRSAQEDEDAEE--- 392
Query: 408 DAQERARALDDWKDENPRGAGNSKLTPCG 322
E+ARA DDWKD+NPRGAGN KLTPCG
Sbjct: 393 ---EKARAWDDWKDDNPRGAGNKKLTPCG 418
>pir||T03608 chilling-induced protein - rice gi|984756|emb|CAA90866.1|
chilling-inducible protein [Oryza sativa (japonica
cultivar-group)]
Length = 379
Score = 118 bits (296), Expect = 5e-26
Identities = 52/89 (58%), Positives = 69/89 (77%)
Frame = -3
Query: 588 FQPSHRMPTMSIEEAGLKEMEIMNKWQETNVRLMEEANSSWYKEKKSKPGEDDDEDEDDD 409
FQPS+R+PTMSIEEAGL+EM++M KWQE ++++E+NS+W+K+ ED+D +E
Sbjct: 297 FQPSYRLPTMSIEEAGLREMKMMEKWQERTAKMIQESNSAWHKDGSRSAQEDEDAEE--- 353
Query: 408 DAQERARALDDWKDENPRGAGNSKLTPCG 322
E+AR DDWKD+NPRGAGN KLTPCG
Sbjct: 354 ---EKARGWDDWKDDNPRGAGNKKLTPCG 379
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 530,664,759
Number of Sequences: 1393205
Number of extensions: 12176112
Number of successful extensions: 136411
Number of sequences better than 10.0: 692
Number of HSP's better than 10.0 without gapping: 59241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97441
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
